Difference between revisions of "Initial Meeting- Aug 2011"
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From email: | From email: | ||
Mary Schaeffer: | Mary Schaeffer: | ||
| − | These are all new annotations – and there are a lot, as each gene-model has some expression. I am lumping the putative splice variants to one model. For our 60 tissues for this set, the number of PO terms is some 52 distinct ones. | + | These are all new annotations – and there are a lot, as each gene-model has some expression. I am lumping the putative splice variants to one model. |
| + | |||
| + | For our 60 tissues for this set, the number of PO terms is some 52 distinct ones. | ||
=Questions= | =Questions= | ||
Revision as of 18:25, 3 August 2011
Notes about the dataset:
From email: Mary Schaeffer: These are all new annotations – and there are a lot, as each gene-model has some expression. I am lumping the putative splice variants to one model.
For our 60 tissues for this set, the number of PO terms is some 52 distinct ones.
Questions
from MS by email:
- In a few cases, there is a classical gene name for the gene model. I assume these could be supplied as synonyms? Or, would you prefer they be supplied as a separate row?
- Do you still wish to have separate files for anatomy and growth terms?
I think that might be a good idea as well to make the huge file easier to deal with.
- Note, the instructions on the wiki for field 13. TAXON deal with Field 12 and should be altered.
I am not sure I understand to which page you are referring. The info shown here: http://wiki.plantontology.org:8080/index.php/Annotation_File_Format looks like it matches the GO page (http://www.geneontology.org/GO.format.gaf-2_0.shtml), as it should. Could you please send the link?
