Difference between revisions of "PAG2011 Computer Demo"
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-develop an infrastructure to support plant comparative genomics (PO plus associations) | -develop an infrastructure to support plant comparative genomics (PO plus associations) | ||
| − | -community outreach to encourage contributions of annotations for more species (web-based annotation tool) | + | -community outreach to encourage contributions of annotations for more species (Phenote, web-based annotation tool in development for future) |
====Changes to the PO in the past year==== | ====Changes to the PO in the past year==== | ||
| − | + | Expansion to include all plants: | |
| − | - | + | -more general definitions of upper-level terms |
| − | - | + | -new taxon-specific terms: examples from Musa or potato |
| − | |||
| − | - | + | New upper-level structure for PSO |
| − | - | + | |
| + | Progress toward Obo-Foundry compliance: | ||
| + | |||
| + | -complete "is_a" hierarchy | ||
| + | |||
| + | -computer-readable definitions in genus-differentia form | ||
| + | |||
| + | ===(Brief) Overview of the POC website=== | ||
| + | |||
| + | -Homepage and links from there | ||
| + | |||
| + | -PO wiki | ||
===Using the ontology browser=== | ===Using the ontology browser=== | ||
| Line 34: | Line 44: | ||
-accessing annotations | -accessing annotations | ||
| − | |||
| − | |||
===Requesting new terms=== | ===Requesting new terms=== | ||
| Line 46: | Line 54: | ||
===Downloading the PO files=== | ===Downloading the PO files=== | ||
| + | |||
| + | -link to download page | ||
| + | |||
| + | -ontology files can be viewed in text editor or OboEdit | ||
===Contributing annotations=== | ===Contributing annotations=== | ||
| + | |||
| + | see [http://outreach.gramene.org/gramene-outreach/index.php/ASPB_2010_Workshop ASPB_2010_Workshop] | ||
Latest revision as of 01:21, 12 January 2011
Outline:
Introduction of the POC project
General introduction
Goals of POC:
-develop a structured vocabulary for plant anatomical entities and plant growth and developmental stages (the PO)
-develop an infrastructure to support plant comparative genomics (PO plus associations)
-community outreach to encourage contributions of annotations for more species (Phenote, web-based annotation tool in development for future)
Changes to the PO in the past year
Expansion to include all plants:
-more general definitions of upper-level terms
-new taxon-specific terms: examples from Musa or potato
New upper-level structure for PSO
Progress toward Obo-Foundry compliance:
-complete "is_a" hierarchy
-computer-readable definitions in genus-differentia form
(Brief) Overview of the POC website
-Homepage and links from there
-PO wiki
Using the ontology browser
-searching
-browsing
-accessing annotations
Requesting new terms
-link to SVN through PO homepage
-register and sign in before submitting!
-how to view old tracker items
Downloading the PO files
-link to download page
-ontology files can be viewed in text editor or OboEdit
