Difference between revisions of "For Next Release:"
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| − | == | + | =To-do list for Next Release:= |
| − | * | + | * Need to update the download page and the [http://plantontology-dev.cgrb.oregonstate.edu/docs/otherdocs/citingpoc.html citations] pages |
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| + | * See [[Plant_Ontology_Web_Site_Update:_2012]] for more details of proposed revisions | ||
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| + | * Items on the [http://palea.cgrb.oregonstate.edu/trac/report/1 Jaiswal lab tracker]: | ||
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| + | ** PO:IDs in definitions working as links | ||
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| + | ==Ontology Revision Priorities== | ||
| + | * See discussions of goals and priorities on [[POC_Conf._Call_8-27-13]] | ||
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| + | * See items in progress on [[Items_for_future_meetings]] | ||
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| + | * Complete old user requests/SF tracker items- Ongoing process.... | ||
==Continue revisions and adding new terms for wood ontology== | ==Continue revisions and adding new terms for wood ontology== | ||
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[http://dendrome.ucdavis.edu/treegenes/ TreeGenes] and [http://www.fagaceae.org/ Fagaceae Genomics Web] | [http://dendrome.ucdavis.edu/treegenes/ TreeGenes] and [http://www.fagaceae.org/ Fagaceae Genomics Web] | ||
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==Browser Update:== | ==Browser Update:== | ||
Latest revision as of 20:44, 12 October 2016
Back to Main_Page#PO_Releases_and_Database_Updates
To-do list for Next Release:
- Need to update the download page and the citations pages
- See Plant_Ontology_Web_Site_Update:_2012 for more details of proposed revisions
- Items on the Jaiswal lab tracker:
- PO:IDs in definitions working as links
Ontology Revision Priorities
- See discussions of goals and priorities on POC_Conf._Call_8-27-13
- See items in progress on Items_for_future_meetings
- Complete old user requests/SF tracker items- Ongoing process....
Continue revisions and adding new terms for wood ontology
Most terms are in the PAE branch or for GO.
Can continue to add annotations as we go along, as well.
Potato Annotations
LC has been in contact with the group who published the potato genome paper and they are interested in collaborating with us to assign ontology terms to the annotations.
From Dr. Richard Finker (Wageningen, The Netherlands):
"We are also interested to use trait ontologies to assist in candidate gene selection within regions of interest, I'm eager to discuss with you on the efforts of cross linking ontologies to biological relevant entities. e.g. a metabolite content trait to its e.g. chebi ontology ID, form which we could obtain info about the pathway."
This will go in the next release, do they have expression data- RNA Seq?
Wood Annotations
TreeGenes and Fagaceae Genomics Web
Browser Update:
- What is the status of the update to AmiGO 2.0?
- move files to live tag, update /trunk/ontology/OBO_format/Readme.txt
- file naming and which variations of the file to create for each release - check with cjm
- update translations synonyms- send to Ale and YY
