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| − | See items on [[Items_for_future_meetings]] page
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| − | | + | ''Meeting cancelled" |
| − | =Meeting Report=
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| − | ==[http://www.intlpag.org/ PAG 2013], San Diego, CA; January 12th - 16th, 2013==
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| − | We hosted a workshop focusing on:
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| − | [https://pag.confex.com/pag/xxi/webprogram/Session1596.html Applications of Ontologies for Plant and Animal Genomics]
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| − | * Date and Time: Saturday, January 12, 2013: 08:00 AM - 10:10 AM, Royal Palm Salon 5-6
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| − | Speakers: Eva Huala, Reinhard Simon, Elizabeth Arnaud, Chris Mungall, and Pankal presented the cROP Vision
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| − | posters:
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| − | LC presented a [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=18A8C8CD poster #P0936] "Development of the Reference Plant Trait Ontology: A Unified Resource for Plant Phenomics".
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| − | JP presented an [https://pag.confex.com/pag/xxi/webprogram/Paper7520.html AISO Computer Demo]: Date and Time: Sunday, January 13, 2013; 5:20 PM, California room
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| − | =Update on planning for cROP proposal=
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| − | EU consortium is moving ahead with the ERA-CAPs propsal- they will have a meeting later this week in Paris to proceed with writing
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| − | See notes on [https://docs.google.com/document/d/1rbbqTUFE6OY68X4dbI8uFVsZ-LQkJpsrAMtIUF_NiM0/edit gdocs]
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| − | Schema: [[File:CROP schema (EA 1-15-13).jpg]]
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| − | From EA:
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| − | "As our project (ie:GCP) cannot be a BREAD idea and EAGER project, Diana suggested that The GCP/Bioversity entry point in the proposal can be through SAVI, Science Across Virtual Institutes, showing that the product we are all aiming at will be the glue between the centers. Particularly if our product is web based. We can also be partner sin the PGRP proposal."
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| − | =Components of cROP=
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| − | ==Reference Trait Ontology==
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| − | *Ref-TO should be hosted and coordinated at OSU, but should solicit input on it from the EU partners- responsibility for various aspects
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| − | ==Plant Disease Ontology-PDO==
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| − | - involvement of pathologist at OSU?
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| − | ==Environment Ontology==
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| − | =Upcoming meetings and Presentations 2013:=
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| − | ==Phenotype Ontology RCN Annual Summit Meeting, Feb. 25th - 27th, 2013, Durham, NC==
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| − | [http://www.phenotypercn.org Phenotype Ontology RCN]
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| − | The workshop and meeting will be held at the National Evolutionary Synthesis Center in Durham, NC, from Monday morning, February 25 through Wednesday noon, February 27th (you would arrive Sunday evening).
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| − | Overall goals: To introduce and establish communication and collaboration among scientists from different research backgrounds.
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| − | The two primary themes: The use of text mining phenotypes and representing behavior in ontologies.
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| − | For more information: please contact Paula Mabee (pmabee@usd.edu)
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| − | ==Biocuration 2013 conference, Cambridge, 7-10th April 2013==
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| − | submission deadline for abstracts for posters is Jan 31st.
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| − | website and registration are now open: [http://www.ebi.ac.uk/biocuration2013/ Biocuration 2013]
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| − | ==PRO-PO-GO meeting, May 15-16th 2013==
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| − | Please see this page for more information: [[PRO-PO-GO_Meeting]]
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| − | Location: Buffalo, NY
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| − | Dates: May 15-16th, 2013.
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| − | Goals:
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| − | # To educate members of the PRO, PO and GO communities concerning developments in each of the three ontologies, with a view to enhanced coordination
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| − | # To identify potentially fruitful applications which such enhanced coordination might bring
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| − | # To enhance the Protein Ontology treatment of plant-related proteins
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| − | # To address coordination issues between the GO and PO, for example as concerns treatment of development stages
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| − | # To further those aspects of CROP which relate to PRO and GO [this is assuming that PRO is included as one of the external ontologies in CROP]
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| − | Tentative participant list:
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| − | PO Consortium members: Pankaj Jaiswal and Laurel Cooper (OSU), Dennis Stevenson (NYBG), Barry Smith (Buffalo), others?
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| − | GO Consortium members: Jane Lomax (EBI), Judith Blake (JAX), Alex Diehl (Buffalo) who else?
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| − | PRO Consortium members: Cathy Wu, Alan Ruttenberg (Buffalo)
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| − | ''BS would like a list of who we would like to include in the meeting and whose costs can be covered by PO'' | |
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| − | ==10th Extended Semantic Web Conference (ESWC) Montpellier, 26-30 May 2013==
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| − | [http://2013.eswc-conferences.org/ Extended Semantic Web Conference] Montpellier
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| − | Location: Montpellier, 26-30 May 2013.
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| − | Agropolis Montpellier, the University of Montpellier and Bioversity are collaborating to organize a one-day workshop entitled 'Agrobiodiversity semantics' as part of the larger conference.
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| − | Paraphrased from email exchange with EA (Bioversity):
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| − | [https://docs.google.com/document/d/1XlWuku3VRXvavxml8Bl7fQzfP_xxXHhjR_NRIWpK0DI/edit workshop proposal]
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| − | "We are finalizing a workshop proposal to be submitted in the 23rd to the conference organizing committee. In parallel, we are developing a proposal for raising some support funds. | |
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| − | Ontologies will be part of the workshop discussion. The latest development sent by Justin on AISO also raised interest of the organizing committee. So, we would you like that the Plant Ontology team be represented in the scientific committee of our workshop.
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| − | This is a very first draft of course but will provide you with the context, scientific objectives, and expected outputs. Would you accept in principle (if the workshop is accepted and funds raised) to join our committee and submit a a paper for a presentation and/or poster? Deadline will be March and April.
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| − | ==MONOCOTS V Meeting at NYBG, July 5th - 14th, 2013==
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| − | [http://www.regonline.com/builder/site/Default.aspx?EventID=1060172 MONOCOTS V]:
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| − | 5th International Conference on Comparative Biology of Monocotyledons
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| − | Friday, July 05, 2013 7:00 AM -
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| − | Sunday, July 14, 2013 12:00 PM (Eastern Time)
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| − | The New York Botanical Garden & Fordham University
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| − | =Next meeting scheduled for Tuesday, Jan 29th, 2013 at 10am Pacific/1pm Eastern=
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