Difference between revisions of "New terms and obsolete terms Release 19"

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Back to [[Release_19]]
 
Back to [[Release_19]]
  
−
Jump to [[Summary_of_Changes_to_Release_19]].  
+
Jump to [[Details_of_Changes_in_PO_Release_19]].  
  
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=New terms=
+
=New terms- PAE branch=
−
==PAE branch==
 
 
sepal epidermis giant cell (PO:0025499)
 
sepal epidermis giant cell (PO:0025499)
  
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tuberous root (PO:0025523)
 
tuberous root (PO:0025523)
  
−
leaf lamina intramarginal vein (new PO:0025520)
+
leaf lamina intramarginal vein (PO:0025520)
  
 
unicellular plant gametangium (PO:0025521)
 
unicellular plant gametangium (PO:0025521)
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spermatogenous cell (PO:0025525)
 
spermatogenous cell (PO:0025525)
  
−
body cell (PO:0025525)
+
body cell (PO:0025526)
 
   
 
   
−
prothallial cell (new PO:id)
+
prothallial cell (PO:0025533)
−
 
 
−
== Plant Structure Development Stage branch==
 
−
whole plant fruit development stage (PO:0025500)
 
−
 
 
−
fruit formation stage (PO:0025501)
 
−
 
 
−
fruit ripening stage (PO:0025502)
 
−
 
 
−
fruit intiation stage (PO:0025503)
 
−
 
 
−
fruit size up to 10% stage (PO:0025504)
 
−
 
 
−
fruit size 10 to 30% stage (PO:0025505)
 
  
−
fruit size 30 to 50% stage (PO:0025506)
+
ventral canal cell (PO:0025524)
  
−
fruit size 50 to 70% stage (PO:0025507)
+
20
  
−
fruit size 70% to final size stage (PO:0025508)
+
=New terms- Plant Structure Development Stage branch=
 +
* whole plant fruit development stage (PO:0025500)
  
−
bud burst stage PO:0025532
+
* fruit initiation stage (PO:0025503)
  
−
shoot system development stage (PO:0025527)
+
* fruit formation stage (PO:0025501)
 +
** fruit size up to 10% stage (PO:0025504)
 +
** fruit size 10 to 30% stage (PO:0025505)
 +
** fruit size 30 to 50% stage (PO:0025506)
 +
** fruit size 50 to 70% stage (PO:0025507)
 +
** fruit size 70% to final size stage (PO:0025508)
  
−
bud development stage (PO:0025528)
+
* shoot system development stage (PO:0025527)
 +
** bud development stage (PO:0025528)
 +
** bud dormancy stage (PO:0025529)
 +
** bud swell stage (PO:0025531)
 +
** bud burst stage PO:0025532
  
−
bud dormancy stage (PO:0025529)
+
* reproductive shoot system development stage (PO:0025530)
  
−
bud swell stage (PO:0025531)
+
* fruit development stage (PO:0001002)
−
 
+
** fruit ripening stage (PO:0025502)
−
reproductive shoot system development stage (PO:0025530)
 
  
 
=Renamed terms (same PO ID)=
 
=Renamed terms (same PO ID)=
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leaf anlagen  > vascular leaf anlagen (PO:0025431)
 
leaf anlagen  > vascular leaf anlagen (PO:0025431)
  
−
megagametophyte cell (PO:0025026) > embryo sac cell
+
megagametophyte cell > embryo sac cell (PO:0025026)
  
 
tuber > shoot axis tuber (PO:0004543)
 
tuber > shoot axis tuber (PO:0004543)
Line 90: Line 85:
 
central cell > embryo sac central cell (PO:0020090)
 
central cell > embryo sac central cell (PO:0020090)
  
−
==Renamed terms, PSDS branch==
+
shoot meristem > shoot system meristem (PO:0006079)
−
 
 
−
5 fruit formation stage > whole plant fruit formation stage  (PO:0007042)
 
−
 
 
−
6 ripening stage > whole plant fruit ripening stage (PO:0007010)
 
−
 
 
−
3 inflorescence detectable stage > whole plant inflorescence detectable stage (PO:0007047)
 
−
 
 
−
4 flowering stage > whole plant flowering stage (PO:0007016)
 
  
−
collective plant structure development stage > collective plant organ structure development stage (PO:0025338)
+
tuber axilllary bud meristem > shoot axis tuber axillary bud meristem (PO:0025068)
  
−
FF.00 fruit size up to 10% stage > whole plant fruit formation stage up to 10% (PO:0007032)
+
tuber axillary vegetative bud > shoot axis tuber axillary vegetative bud (PO:0025040
  
−
FF.01 fruit size 10 to 30% stage > whole plant fruit formation stage 10 to 30%  (PO:0007009)
+
tuber epidermis > shoot axis tuber epidermis (PO:0025046)
  
−
FF.02 fruit size 30 to 50% stage > whole plant fruit formation stage 30 to 50%  (PO:0007029)
+
tuber periderm > shoot axis tuber periderm
  
−
FF.03 fruit size 50 to 70% stage > whole plant fruit formation stage 50 to 70%  (PO:0007007)
+
==PSDS branch==
 +
Child terms of '''whole plant fruit development stage''' (PO:0025500):
  
−
FF.04 fruit size 70% to final size stage > whole plant fruit formation stage 70% to final size  (PO:0007027)
+
* 5 fruit formation stage > whole plant fruit formation stage (PO:0007042)
 +
** FF.00 fruit size up to 10% stage > whole plant fruit formation stage up to 10% (PO:0007032)
 +
** FF.01 fruit size 10 to 30% stage > whole plant fruit formation stage 10 to 30%  (PO:0007009)
 +
** FF.02 fruit size 30 to 50% stage > whole plant fruit formation stage 30 to 50%  (PO:0007029)
 +
** FF.03 fruit size 50 to 70% stage > whole plant fruit formation stage 50 to 70%  (PO:0007007)
 +
** FF.04 fruit size 70% to final size stage > whole plant fruit formation stage 70% to final size  (PO:0007027)
  
−
FR.00 beginning of fruit ripening stage (PO:0007036) > beginning of whole plant fruit ripening stage
+
* 6 ripening stage > whole plant fruit ripening stage (PO:0007010)
 +
** FR.00 beginning of fruit ripening stage  > beginning of whole plant fruit ripening stage (PO:0007036)
 +
** FR.01 early stage of fruit ripening  > early whole plant fruit ripening stage (PO:0007001)
 +
** FR.02 mid stage of fruit ripening > mid whole plant fruit ripening stage (PO:0007031)
 +
** FR.03 late stage of fruit ripening  > late whole plant fruit ripening stage (PO:0007050)
 +
** FR.04 fruit ripening complete stage > whole plant fruit ripening complete stage  (PO:0007038)
  
−
FR.01 early stage of fruit ripening (PO:0007001) > early whole plant fruit ripening stage
 
  
−
FR.02 mid stage of fruit ripening (PO:0007031) > mid whole plant fruit ripening stage
+
* 3 inflorescence detectable stage > whole plant inflorescence detectable stage (PO:0007047)
  
−
FR.03 late stage of fruit ripening (PO:0007050) > late whole plant fruit ripening stage
+
* 4 flowering stage > whole plant flowering stage (PO:0007016)
  
−
FR.04 fruit ripening complete stage (PO:0007038) > whole plant fruit ripening complete stage
+
* collective plant structure development stage > collective plant organ structure development stage (PO:0025338)
  
 
=Obsoleted PAE terms=
 
=Obsoleted PAE terms=
−
non-articulated laticifer ([[http://www.plantontology.org/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=PO:0005007&session_id=9509b1356034151 PO:0005007]), replaced by non-articulated laticifer cell (PO:0006222)
+
* non-articulated laticifer ([http://www.plantontology.org/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=PO:0005007&session_id=9509b1356034151 PO:0005007]). This term was made obsolete because a non-articulated laticifer is not a tissue type but consists of a single cell. Use non-articulated laticifer cell ([http://www.plantontology.org/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=PO:0006222&session_id=2583b1357326304 PO:0006222]) instead.
  
−
laticifer ([http://www.plantontology.org/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=PO:0005053&session_id=9509b1356034151&show_associations=list PO:0005053]), consider articulated laticifer (PO:0005008), articulated laticifer cell (PO:0006221) or non-articulated laticifer cell (PO:0006222)
+
* laticifer ([http://www.plantontology.org/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=PO:0005053&session_id=9509b1356034151&show_associations=list PO:0005053]). This term was made obsolete because it had only one subclass. Consider articulated laticifer cell ([http://www.plantontology.org/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=PO:0006221&session_id=9509b1356034151 PO:0006221]) or non-articulated laticifer cell ([http://www.plantontology.org/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=PO:0006222&session_id=2583b1357326304 PO:0006222]) instead.

Latest revision as of 20:08, 4 January 2013

Back to Release_19

Jump to Details_of_Changes_in_PO_Release_19.

New terms- PAE branch

sepal epidermis giant cell (PO:0025499)

archegonium central cell (PO:0025509)

archegonium initial cell (PO:0025510)

petal spur (PO:0025511)

corolla spur (PO:0025512)

organ lamina (PO:0025513)

phyllome lamina lobe (PO:0025514)

phyllome lamina tooth (PO:0025515)

phyllome lamina crena (PO:0025516)

leaf lamina lobe (PO:0025517)

leaf lamina tooth (PO:0025518)

leaf lamina crena (PO:0025519)

tuber (PO:0025522)

tuberous root (PO:0025523)

leaf lamina intramarginal vein (PO:0025520)

unicellular plant gametangium (PO:0025521)

spermatogenous cell (PO:0025525)

body cell (PO:0025526)

prothallial cell (PO:0025533)

ventral canal cell (PO:0025524)

20

New terms- Plant Structure Development Stage branch

  • whole plant fruit development stage (PO:0025500)
  • fruit initiation stage (PO:0025503)
  • fruit formation stage (PO:0025501)
    • fruit size up to 10% stage (PO:0025504)
    • fruit size 10 to 30% stage (PO:0025505)
    • fruit size 30 to 50% stage (PO:0025506)
    • fruit size 50 to 70% stage (PO:0025507)
    • fruit size 70% to final size stage (PO:0025508)
  • shoot system development stage (PO:0025527)
    • bud development stage (PO:0025528)
    • bud dormancy stage (PO:0025529)
    • bud swell stage (PO:0025531)
    • bud burst stage PO:0025532
  • reproductive shoot system development stage (PO:0025530)
  • fruit development stage (PO:0001002)
    • fruit ripening stage (PO:0025502)

Renamed terms (same PO ID)

PAE branch

basal axillary shoot > basal axillary shoot system (PO:0005001)

leaf anlagen > vascular leaf anlagen (PO:0025431)

megagametophyte cell > embryo sac cell (PO:0025026)

tuber > shoot axis tuber (PO:0004543)

tuberous root > tuberous root tuber (PO:0025476)

plant gametangium > multicellular plant gametangium (PO:0025124)

central cell > embryo sac central cell (PO:0020090)

shoot meristem > shoot system meristem (PO:0006079)

tuber axilllary bud meristem > shoot axis tuber axillary bud meristem (PO:0025068)

tuber axillary vegetative bud > shoot axis tuber axillary vegetative bud (PO:0025040

tuber epidermis > shoot axis tuber epidermis (PO:0025046)

tuber periderm > shoot axis tuber periderm

PSDS branch

Child terms of whole plant fruit development stage (PO:0025500):

  • 5 fruit formation stage > whole plant fruit formation stage (PO:0007042)
    • FF.00 fruit size up to 10% stage > whole plant fruit formation stage up to 10% (PO:0007032)
    • FF.01 fruit size 10 to 30% stage > whole plant fruit formation stage 10 to 30% (PO:0007009)
    • FF.02 fruit size 30 to 50% stage > whole plant fruit formation stage 30 to 50% (PO:0007029)
    • FF.03 fruit size 50 to 70% stage > whole plant fruit formation stage 50 to 70% (PO:0007007)
    • FF.04 fruit size 70% to final size stage > whole plant fruit formation stage 70% to final size (PO:0007027)
  • 6 ripening stage > whole plant fruit ripening stage (PO:0007010)
    • FR.00 beginning of fruit ripening stage > beginning of whole plant fruit ripening stage (PO:0007036)
    • FR.01 early stage of fruit ripening > early whole plant fruit ripening stage (PO:0007001)
    • FR.02 mid stage of fruit ripening > mid whole plant fruit ripening stage (PO:0007031)
    • FR.03 late stage of fruit ripening > late whole plant fruit ripening stage (PO:0007050)
    • FR.04 fruit ripening complete stage > whole plant fruit ripening complete stage (PO:0007038)


  • 3 inflorescence detectable stage > whole plant inflorescence detectable stage (PO:0007047)
  • 4 flowering stage > whole plant flowering stage (PO:0007016)
  • collective plant structure development stage > collective plant organ structure development stage (PO:0025338)

Obsoleted PAE terms

  • non-articulated laticifer (PO:0005007). This term was made obsolete because a non-articulated laticifer is not a tissue type but consists of a single cell. Use non-articulated laticifer cell (PO:0006222) instead.
  • laticifer (PO:0005053). This term was made obsolete because it had only one subclass. Consider articulated laticifer cell (PO:0006221) or non-articulated laticifer cell (PO:0006222) instead.
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