Difference between revisions of "Oryza sativa LCM Aya et al, 2011"

From Plant Ontology Wiki
Jump to navigationJump to search
(Created page with '[Aya et al.http://www.ncbi.nlm.nih.gov/pubmed/22046259] {| {{table}} | align="center" style="background:#f0f0f0;"|'''Sample ID''' | align="center" style="background:#f0f0f0;"|'…')
 
 
(5 intermediate revisions by 2 users not shown)
Line 1: Line 1:
−
[Aya et al.http://www.ncbi.nlm.nih.gov/pubmed/22046259]
+
Comprehensive network analysis of anther-expressed genes in rice by the combination of 33 laser microdissection and 143 spatiotemporal microarrays.
  
 +
[http://www.ncbi.nlm.nih.gov/pubmed/22046259 Aya et al. 2011]
  
 +
----
 +
Legends:
 +
#Gene ID: RAP-japan/IRGSP rice gene locus ID
 +
#Cultivar: Nipponbare
 +
#Gene data: Derived from supplementary tables ST2-ST25
 +
#PO:annotations: best match to the sample description in the following tables. If required the PO annotations to growth stages were done to #both the organ/structure specific development stages and the whole plant growth stages. Every sample has PO whole plant growth stage #annotations.
 +
----
 +
'''PO anatomy and growth stage annotations table:'''
 
{| {{table}}
 
{| {{table}}
 
| align="center" style="background:#f0f0f0;"|'''Sample ID'''
 
| align="center" style="background:#f0f0f0;"|'''Sample ID'''
Line 127: Line 136:
 
|  
 
|  
 
|}
 
|}
 +
 +
 +
 +
=================
 +
'''Table S1 from [Aya et al.http://www.ncbi.nlm.nih.gov/pubmed/22046259] with  GEO IDs of the 176 microarray profiles used the study.'''
 +
{| {{table}}
 +
| align="center" style="background:#f0f0f0;"|'''GEO_ID'''
 +
| align="center" style="background:#f0f0f0;"|'''DATA SET ID'''
 +
| align="center" style="background:#f0f0f0;"|'''SAMPLE ID'''
 +
| align="center" style="background:#f0f0f0;"|'''CULTIVATOR'''
 +
|-
 +
| GSM534579 ||LeafBlade_27DAT_12:00_rep1||Leaf blade_vegetative_12:00*||Nipponbare
 +
|-
 +
| GSM534580 ||LeafBlade_27DAT_12:00_rep2||||Nipponbare
 +
|-
 +
| GSM534581 ||LeafBlade_27DAT_12:00_rep3||||Nipponbare
 +
|-
 +
| GSM534582 ||LeafBlade_27DAT_24:00_rep1||Leaf blade_vegetative_00:00 ||Nipponbare
 +
|-
 +
| GSM534583 ||LeafBlade_27DAT_24:00_rep2||||Nipponbare
 +
|-
 +
| GSM534584 ||LeafBlade_27DAT_24:00_rep3||||Nipponbare
 +
|-
 +
| GSM534585 ||LeafBlade_76DAT_12:00_rep1||Leaf blade_reproductive_12:00 ||Nipponbare
 +
|-
 +
| GSM534586 ||LeafBlade_76DAT_12:00_rep2||||Nipponbare
 +
|-
 +
| GSM534587 ||LeafBlade_76DAT_12:00_rep3||||Nipponbare
 +
|-
 +
| GSM534588 ||LeafBlade_76DAT_24:00_rep1||Leaf blade_reproductive_00:00 ||Nipponbare
 +
|-
 +
| GSM534589 ||LeafBlade_76DAT_24:00_rep2||||Nipponbare
 +
|-
 +
| GSM534590 ||LeafBlade_76DAT_24:00_rep3||||Nipponbare
 +
|-
 +
| GSM534591 ||LeafBlade_125DAT_12:00_rep1||Leaf blade_ripening_12:00 ||Nipponbare
 +
|-
 +
| GSM534592 ||LeafBlade_125DAT_12:00_rep2||||Nipponbare
 +
|-
 +
| GSM534593 ||LeafBlade_125DAT_12:00_rep3||||Nipponbare
 +
|-
 +
| GSM534594 ||LeafBlade_125DAT_24:00_rep1||Leaf blade_ripening_00:00 ||Nipponbare
 +
|-
 +
| GSM534595 ||LeafBlade_125DAT_24:00_rep2||||Nipponbare
 +
|-
 +
| GSM534596 ||LeafBlade_125DAT_24:00_rep3||||Nipponbare
 +
|-
 +
| GSM534597 ||LeafSheath_27DAT_12:00_rep1||Leaf sheath_vegetative_12:00* ||Nipponbare
 +
|-
 +
| GSM534598 ||LeafSheath_27DAT_12:00_rep2||||Nipponbare
 +
|-
 +
| GSM534599 ||LeafSheath_27DAT_12:00_rep3||||Nipponbare
 +
|-
 +
| GSM534600 ||LeafSheath_27DAT_24:00_rep1||Leaf sheath_vegetative_00:00 ||Nipponbare
 +
|-
 +
| GSM534601 ||LeafSheath_27DAT_24:00_rep2||||Nipponbare
 +
|-
 +
| GSM534602 ||LeafSheath_27DAT_24:00_rep3||||Nipponbare
 +
|-
 +
| GSM534603 ||LeafSheath_76DAT_12:00_rep1||Leaf sheath_reproductive_12:00 ||Nipponbare
 +
|-
 +
| GSM534604 ||LeafSheath_76DAT_12:00_rep2||||Nipponbare
 +
|-
 +
| GSM534605 ||LeafSheath_76DAT_12:00_rep3||||Nipponbare
 +
|-
 +
| GSM534606 ||LeafSheath_76DAT_24:00_rep1||Leaf sheath_reproductive_00:00 ||Nipponbare
 +
|-
 +
| GSM534607 ||LeafSheath_76DAT_24:00_rep2||||Nipponbare
 +
|-
 +
| GSM534608 ||LeafSheath_76DAT_24:00_rep3||||Nipponbare
 +
|-
 +
| GSM534609 ||Root_27DAT_12:00_rep1||Root_vegetative_12:00* ||Nipponbare
 +
|-
 +
| GSM534610 ||Root_27DAT_12:00_rep2||||Nipponbare
 +
|-
 +
| GSM534611 ||Root_27DAT_12:00_rep3||||Nipponbare
 +
|-
 +
| GSM534612 ||Root_27DAT_24:00_rep1||Root_vegetative_00:00 ||Nipponbare
 +
|-
 +
| GSM534613 ||Root_27DAT_24:00_rep2||||Nipponbare
 +
|-
 +
| GSM534614 ||Root_27DAT_24:00_rep3||||Nipponbare
 +
|-
 +
| GSM534615 ||Root_76DAT_12:00_rep1||Root_reproductive_12:00 ||Nipponbare
 +
|-
 +
| GSM534616 ||Root_76DAT_12:00_rep2||||Nipponbare
 +
|-
 +
| GSM534617 ||Root_76DAT_12:00_rep3||||Nipponbare
 +
|-
 +
| GSM534618 ||Root_76DAT_24:00_rep1||Root_reproductive_00:00 ||Nipponbare
 +
|-
 +
| GSM534619 ||Root_76DAT_24:00_rep2||||Nipponbare
 +
|-
 +
| GSM534620 ||Root_76DAT_24:00_rep3||||Nipponbare
 +
|-
 +
| GSM534621 ||Stem_83DAT_12:00_rep1||Stem_reproductive_12:00* ||Nipponbare
 +
|-
 +
| GSM534622 ||Stem_83DAT_12:00_rep2||||Nipponbare
 +
|-
 +
| GSM534623 ||Stem_83DAT_12:00_rep3||||Nipponbare
 +
|-
 +
| GSM534624 ||Stem_83DAT_24:00_rep1||Stem_reproductive_00:00 ||Nipponbare
 +
|-
 +
| GSM534625 ||Stem_83DAT_24:00_rep2||||Nipponbare
 +
|-
 +
| GSM534626 ||Stem_83DAT_24:00_rep3||||Nipponbare
 +
|-
 +
| GSM534627 ||Stem_90DAT_12:00_rep1||Stem_ripening_12:00 ||Nipponbare
 +
|-
 +
| GSM534628 ||Stem_90DAT_12:00_rep2||||Nipponbare
 +
|-
 +
| GSM534629 ||Stem_90DAT_12:00_rep3||||Nipponbare
 +
|-
 +
| GSM534630 ||Stem_90DAT_24:00_rep1||Stem_ripening_00:00 ||Nipponbare
 +
|-
 +
| GSM534631 ||Stem_90DAT_24:00_rep2||||Nipponbare
 +
|-
 +
| GSM534632 ||Stem_90DAT_24:00_rep3||||Nipponbare
 +
|-
 +
| GSM534633 ||Inflorescence_0.6-1.0 mm_rep1||Inflorescence_0.6-1.0 mm* ||Nipponbare
 +
|-
 +
| GSM534634 ||Inflorescence_0.6-1.0 mm_rep2||||Nipponbare
 +
|-
 +
| GSM534635 ||Inflorescence_0.6-1.0 mm_rep3||||Nipponbare
 +
|-
 +
| GSM534636 ||Inflorescence_3.0-4.0 mm_rep1||Inflorescence_3.0-4.0 mm ||Nipponbare
 +
|-
 +
| GSM534637 ||Inflorescence_3.0-4.0 mm_rep2||||Nipponbare
 +
|-
 +
| GSM534638 ||Inflorescence_3.0-4.0 mm_rep3||||Nipponbare
 +
|-
 +
| GSM534639 ||Inflorescence_5.0-10 mm_rep1||Inflorescence_5.0-10.0 mm ||Nipponbare
 +
|-
 +
| GSM534640 ||Inflorescence_5.0-10 mm_rep2||||Nipponbare
 +
|-
 +
| GSM534641 ||Inflorescence_5.0-10 mm_rep3||||Nipponbare
 +
|-
 +
| GSM534642 ||Anther_0.3-0.6 mm_rep1||Anther_0.3-0.6 mm*||Nipponbare
 +
|-
 +
| GSM534643 ||Anther_0.3-0.6 mm_rep2||||Nipponbare
 +
|-
 +
| GSM534644 ||Anther_0.7-1.0 mm_rep1||Anther_0.7-1.0 mm*||Nipponbare
 +
|-
 +
| GSM534645 ||Anther_0.7-1.0 mm_rep2||||Nipponbare
 +
|-
 +
| GSM534646 ||Anther_0.7-1.0 mm_rep3||||Nipponbare
 +
|-
 +
| GSM534647 ||Anther_1.2-1.5 mm_rep1||Anther_1.2-1.5 mm*||Nipponbare
 +
|-
 +
| GSM534648 ||Anther_1.2-1.5 mm_rep2||||Nipponbare
 +
|-
 +
| GSM534649 ||Anther_1.2-1.5 mm_rep3||||Nipponbare
 +
|-
 +
| GSM534650 ||Anther_1.6-2.0 mm_rep1||Anther_1.6-2.0 mm*||Nipponbare
 +
|-
 +
| GSM534651 ||Anther_1.6-2.0 mm_rep2||||Nipponbare
 +
|-
 +
| GSM534652 ||Anther_1.6-2.0 mm_rep3||||Nipponbare
 +
|-
 +
| GSM534653 ||Pistil_05-10 cm inflorescence_rep1||Pistil_5-10 cm panicle*||Nipponbare
 +
|-
 +
| GSM534654 ||Pistil_05-10 cm inflorescence_rep2||||Nipponbare
 +
|-
 +
| GSM534655 ||Pistil_05-10 cm inflorescence_rep3||||Nipponbare
 +
|-
 +
| GSM534656 ||Pistil_10-14 cm inflorescence_rep1||Pistil_10-14 cm panicle ||Nipponbare
 +
|-
 +
| GSM534657 ||Pistil_10-14 cm inflorescence_rep2||||Nipponbare
 +
|-
 +
| GSM534658 ||Pistil_10-14 cm inflorescence_rep3||||Nipponbare
 +
|-
 +
| GSM534659 ||Pistil_14-18 cm inflorescence_rep1||Pistil_14-18 cm panicle ||Nipponbare
 +
|-
 +
| GSM534660 ||Pistil_14-18 cm inflorescence_rep2||||Nipponbare
 +
|-
 +
| GSM534661 ||Pistil_14-18 cm inflorescence_rep3||||Nipponbare
 +
|-
 +
| GSM534662 ||Lemma_1.5-2.0 mm floret_rep1||Lemma_1.5-2.0 mm floret*||Nipponbare
 +
|-
 +
| GSM534663 ||Lemma_1.5-2.0 mm floret_rep2||||Nipponbare
 +
|-
 +
| GSM534664 ||Lemma_1.5-2.0 mm floret_rep3||||Nipponbare
 +
|-
 +
| GSM534665 ||Palea_1.5-2.0 mm floret_rep1||Palea_1.5-2.0 mm floret*||Nipponbare
 +
|-
 +
| GSM534666 ||Palea_1.5-2.0 mm floret_rep2||||Nipponbare
 +
|-
 +
| GSM534667 ||Palea_1.5-2.0 mm floret_rep3||||Nipponbare
 +
|-
 +
| GSM534668 ||Lemma_4.0-5.0 mm floret_rep1||Lemma_4.0-5.0 mm floret ||Nipponbare
 +
|-
 +
| GSM534669 ||Lemma_4.0-5.0 mm floret_rep2||||Nipponbare
 +
|-
 +
| GSM534670 ||Lemma_4.0-5.0 mm floret_rep3||||Nipponbare
 +
|-
 +
| GSM534671 ||Palea_4.0-5.0 mm floret_rep1||Palea_4.0-5.0 mm floret ||Nipponbare
 +
|-
 +
| GSM534672 ||Palea_4.0-5.0 mm floret_rep2||||Nipponbare
 +
|-
 +
| GSM534673 ||Palea_4.0-5.0 mm floret_rep3||||Nipponbare
 +
|-
 +
| GSM534674 ||Lemma_7.0 mm floret_rep1||Lemma_7.0 mm floret ||Nipponbare
 +
|-
 +
| GSM534675 ||Lemma_7.0 mm floret_rep2||||Nipponbare
 +
|-
 +
| GSM534676 ||Lemma_7.0 mm floret_rep3||||Nipponbare
 +
|-
 +
| GSM534677 ||Palea_7.0 mm floret_rep1||Palea_7.0 mm floret ||Nipponbare
 +
|-
 +
| GSM534678 ||Palea_7.0 mm floret_rep2||||Nipponbare
 +
|-
 +
| GSM534679 ||Palea_7.0 mm floret_rep3||||Nipponbare
 +
|-
 +
| GSM534680 ||Ovary_01 DAF_rep1||Ovary_01 DAF* ||Nipponbare
 +
|-
 +
| GSM534681 ||Ovary_01 DAF_rep2||||Nipponbare
 +
|-
 +
| GSM534682 ||Ovary_01 DAF_rep3||||Nipponbare
 +
|-
 +
| GSM534683 ||Ovary_03 DAF_rep1||Ovary_03 DAF ||Nipponbare
 +
|-
 +
| GSM534685 ||Ovary_03 DAF_rep2||||Nipponbare
 +
|-
 +
| GSM534686 ||Ovary_03 DAF_rep3||||Nipponbare
 +
|-
 +
| GSM534687 ||Ovary_05 DAF_rep1||Ovary_05DAF ||Nipponbare
 +
|-
 +
| GSM534688 ||Ovary_05 DAF_rep2||||Nipponbare
 +
|-
 +
| GSM534689 ||Ovary_05 DAF_rep3||||Nipponbare
 +
|-
 +
| GSM534690 ||Ovary_07 DAF_rep1||Ovary_07 DAF ||Nipponbare
 +
|-
 +
| GSM534691 ||Ovary_07 DAF_rep2||||Nipponbare
 +
|-
 +
| GSM534692 ||Ovary_07 DAF_rep3||||Nipponbare
 +
|-
 +
| GSM534693 ||Embryo_07 DAF_rep1||Embryo_07 DAF* ||Nipponbare
 +
|-
 +
| GSM534694 ||Embryo_07 DAF_rep2||||Nipponbare
 +
|-
 +
| GSM534695 ||Embryo_07 DAF_rep3||||Nipponbare
 +
|-
 +
| GSM534696 ||Embryo_10 DAF_rep1||Embryo_10 DAF ||Nipponbare
 +
|-
 +
| GSM534697 ||Embryo_10 DAF_rep2||||Nipponbare
 +
|-
 +
| GSM534698 ||Embryo_10 DAF_rep3||||Nipponbare
 +
|-
 +
| GSM534699 ||Embryo_14 DAF_rep1||Embryo_14 DAF ||Nipponbare
 +
|-
 +
| GSM534700 ||Embryo_14 DAF_rep2||||Nipponbare
 +
|-
 +
| GSM534701 ||Embryo_14 DAF_rep3||||Nipponbare
 +
|-
 +
| GSM534702 ||Embryo_28 DAF_rep1||Embryo_28 DAF ||Nipponbare
 +
|-
 +
| GSM534703 ||Embryo_28 DAF_rep2||||Nipponbare
 +
|-
 +
| GSM534704 ||Embryo_28 DAF_rep3||||Nipponbare
 +
|-
 +
| GSM534705 ||Embryo_42 DAF_rep1||Embryo_42 DAF ||Nipponbare
 +
|-
 +
| GSM534706 ||Embryo_42 DAF_rep2||||Nipponbare
 +
|-
 +
| GSM534707 ||Embryo_42 DAF_rep3||||Nipponbare
 +
|-
 +
| GSM534708 ||Endosperm_07 DAF_rep1||Endosperm_07 DAF* ||Nipponbare
 +
|-
 +
| GSM534709 ||Endosperm_07 DAF_rep2||||Nipponbare
 +
|-
 +
| GSM534710 ||Endosperm_07 DAF_rep3||||Nipponbare
 +
|-
 +
| GSM534711 ||Endosperm_10 DAF_rep1||Endosperm_10 DAF ||Nipponbare
 +
|-
 +
| GSM534712 ||Endosperm_10 DAF_rep2||||Nipponbare
 +
|-
 +
| GSM534713 ||Endosperm_10 DAF_rep3||||Nipponbare
 +
|-
 +
| GSM534714 ||Endosperm_14 DAF_rep1||Endosperm_14 DAF ||Nipponbare
 +
|-
 +
| GSM534715 ||Endosperm_14 DAF_rep2||||Nipponbare
 +
|-
 +
| GSM534716 ||Endosperm_14 DAF_rep3||||Nipponbare
 +
|-
 +
| GSM534717 ||Endosperm_28 DAF_rep1||Endosperm_28 DAF ||Nipponbare
 +
|-
 +
| GSM534718 ||Endosperm_28 DAF_rep2||||Nipponbare
 +
|-
 +
| GSM534719 ||Endosperm_28 DAF_rep3||||Nipponbare
 +
|-
 +
| GSM534720 ||Endosperm_42 DAF_rep1||Endosperm_42 DAF ||Nipponbare
 +
|-
 +
| GSM534721 ||Endosperm_42 DAF_rep2||||Nipponbare
 +
|-
 +
| GSM534722 ||Endosperm_42 DAF_rep3||||Nipponbare
 +
|-
 +
| GSM722590 ||Pre_anther_rep1||Anther at premeiosis stage, LMD sample*||Nipponbare
 +
|-
 +
| GSM722591 ||Pre_anther_rep2||||Nipponbare
 +
|-
 +
| GSM722592 ||Pre_anther_rep3||||Nipponbare
 +
|-
 +
| GSM722593 ||MEI-microspore-rep1||Microspore at meiosis stage, LMD sample*||Nipponbare
 +
|-
 +
| GSM722594 ||MEI-microspore-rep2||||Nipponbare
 +
|-
 +
| GSM722595 ||MEI-microspore-rep3||||Nipponbare
 +
|-
 +
| GSM722596 ||MEI-microspore-rep4||||Nipponbare
 +
|-
 +
| GSM722597 ||TET-microspore-rep1||Microspore at tetrad stage, LMD sample*||Nipponbare
 +
|-
 +
| GSM722598 ||TET-microspore-rep2||||Nipponbare
 +
|-
 +
| GSM722599 ||TET-microspore-rep3||||Nipponbare
 +
|-
 +
| GSM722600 ||UN-microspore-rep1||Microspore at uninuclear stage, LMD sample*||Nipponbare
 +
|-
 +
| GSM722601 ||UN-microspore-rep2||||Nipponbare
 +
|-
 +
| GSM722602 ||UN-microspore-rep3||||Nipponbare
 +
|-
 +
| GSM722603 ||BC-pollen-rep1||Pollen at bicelluar stage,LMD sample*||Nipponbare
 +
|-
 +
| GSM722604 ||BC-pollen-rep2||||Nipponbare
 +
|-
 +
| GSM722605 ||BC-pollen-rep3||||Nipponbare
 +
|-
 +
| GSM722606 ||BC-pollen-rep4||||Nipponbare
 +
|-
 +
| GSM722607 ||BC-pollen-rep5||||Nipponbare
 +
|-
 +
| GSM722608 ||BC-pollen-rep6||||Nipponbare
 +
|-
 +
| GSM722609 ||BC-pollen-rep7||||Nipponbare
 +
|-
 +
| GSM722610 ||BC-pollen-rep8||||Nipponbare
 +
|-
 +
| GSM722611 ||TC-pollen-rep1||Pollen at tricelluar stage, LMD sample*||Nipponbare
 +
|-
 +
| GSM722612 ||TC-pollen-rep2||||Nipponbare
 +
|-
 +
| GSM722613 ||TC-pollen-rep3||||Nipponbare
 +
|-
 +
| GSM722614 ||MEI-tapetum-rep1||Tapetum at meiosis stage, LMD sample*||Nipponbare
 +
|-
 +
| GSM722615 ||MEI-tapetum-rep2||||Nipponbare
 +
|-
 +
| GSM722616 ||MEI-tapetum-rep3||||Nipponbare
 +
|-
 +
| GSM722617 ||TET-tapetum-rep1||Tapetum at tetrad stage, LMD sample*||Nipponbare
 +
|-
 +
| GSM722618 ||TET-tapetum-rep2||||Nipponbare
 +
|-
 +
| GSM722619 ||TET-tapetum-rep3||||Nipponbare
 +
|-
 +
| GSM722620 ||UN-tapetum-rep1||Tapetum at uninuclear stage, LMD sample*||Nipponbare
 +
|-
 +
| GSM722621 ||UN-tapetum-rep2||||Nipponbare
 +
|-
 +
| GSM722622 ||UN-tapetum-rep3||||Nipponbare
 +
|-
 +
|
 +
|}
 +
  
  
  
 
[[Category:Annotations]]
 
[[Category:Annotations]]

Latest revision as of 17:32, 18 August 2014

Comprehensive network analysis of anther-expressed genes in rice by the combination of 33 laser microdissection and 143 spatiotemporal microarrays.

Aya et al. 2011

Legends:

  1. Gene ID: RAP-japan/IRGSP rice gene locus ID
  2. Cultivar: Nipponbare
  3. Gene data: Derived from supplementary tables ST2-ST25
  4. PO:annotations: best match to the sample description in the following tables. If required the PO annotations to growth stages were done to #both the organ/structure specific development stages and the whole plant growth stages. Every sample has PO whole plant growth stage #annotations.

PO anatomy and growth stage annotations table:

Sample ID Dataset Anatomy PO ID growth stage PO ID growth stage PO ID ' comments
Anther at premeiosis stage, replicate 1_LMD sample Pre_anther PO:0009066 PO:0001004 PO:0007130
Anther_0.3-0.6 mm Anther_0.3-0.6 mm PO:0009066 PO:0001004 PO:0007130
Anther_0.7-1.0 mm Anther_0.7-1.0 mm PO:0009066 PO:0001004 PO:0007130
Anther_1.2-1.5 mm Anther_1.2-1.5 mm PO:0009066 PO:0001004 PO:0007130
Anther_1.6-2.0 mm Anther_1.6-2.0 mm PO:0009066 PO:0001004 PO:0007130
Embryo_07 DAF Embryo_07 DAF PO:0009009 PO:0001095 PO:0007042 At 5 DAP embryo differentiating the first leaf primordium
Embryo_10 DAF Embryo_10 DAF PO:0009009 PO:0001081 PO:0007042 Morphologically completed 10 DAP embryo
Embryo_14 DAF Embryo_14 DAF PO:0009009 PO:0001081 PO:0007042 milk stage
Embryo_28 DAF Embryo_28 DAF PO:0009009 PO:0001081 PO:0007010 dough
Embryo_42 DAF Embryo_42 DAF PO:0009009 PO:0001081 PO:0007050
Endosperm_07 DAF Endosperm_07 DAF PO:0009089 PO:0007633 PO:0007042
Endosperm_10 DAF Endosperm_10 DAF PO:0009089 PO:0007633 PO:0007042
Endosperm_14 DAF Endosperm_14 DAF PO:0009089 PO:0007633 PO:0007042
Endosperm_28 DAF Endosperm_28 DAF PO:0009089 PO:0007633 PO:0007010
Endosperm_42 DAF Endosperm_42 DAF PO:0009089 PO:0007633 PO:0007050
Inflorescence_0.6-1.0 mm Inflorescence_0.6-1.0 mm PO:0009049 PO:0001083 PO:0007006
Inflorescence_3.0-4.0 mm Inflorescence_3.0-4.0 mm PO:0009049 PO:0001083 PO:0007006
Inflorescence_5.0-10.0 mm Inflorescence_5.0-10 mm PO:0009049 PO:0001083 PO:0007006
Leaf blade_reproductive_00:00 LeafBlade_76DAT_24:00 PO:0020039 - PO:0007130
Leaf blade_reproductive_12:00 LeafBlade_76DAT_12:00 PO:0020039 - PO:0007130
Leaf blade_ripening_00:00 LeafBlade_125DAT_24:00 PO:0020039 - PO:0007010
Leaf blade_ripening_12:00 LeafBlade_125DAT_12:00 PO:0020039 - PO:0007010
Leaf blade_vegetative_00:00 LeafBlade_27DAT_24:00 PO:0020039 - PO:0007134
Leaf blade_vegetative_12:00 LeafBlade_27DAT_12:00 PO:0020039 - PO:0007134
Leaf sheath_reproductive_00:00 LeafSheath_76DAT_24:00 PO:0020104 - PO:0007130
Leaf sheath_reproductive_12:00 LeafSheath_76DAT_12:00 PO:0020104 - PO:0007130
Leaf sheath_vegetative_00:00 LeafSheath_27DAT_24:00 PO:0020104 - PO:0007134
Leaf sheath_vegetative_12:00 LeafSheath_27DAT_12:00 PO:0020104 - PO:0007134
Lemma_1.5-2.0 mm floret Lemma_1.5-2.0 mm floret PO:0009037 PO:0001047 PO:0007130
Lemma_4.0-5.0 mm floret Lemma_4.0-5.0 mm floret PO:0009037 PO:0001047 PO:0007130
Lemma_7.0 mm floret Lemma_7.0 mm floret PO:0009037 PO:0001047 PO:0007130
Microspore at meiosis stage, replicate 1_LMD sample MEI-microspore PO:0020048 PO:0001009 PO:0007130
Microspore at tetrad stage, replicate 1_LMD sample TET-microspore PO:0000032 PO:0001029 PO:0007130
Microspore at uninuclear stage, replicate 1_LMD sample UN-microspore PO:0020048 PO:0001013 PO:0007130
Ovary_01 DAF Ovary_01 DAF PO:0009072 - PO:0007042
Ovary_03 DAF Ovary_03 DAF PO:0009072 - PO:0007042
Ovary_05 DAF Ovary_05 DAF PO:0009072 - PO:0007042
Ovary_07 DAF Ovary_07 DAF PO:0009072 - PO:0007042
Palea_1.5-2.0 mm floret Palea_1.5-2.0 mm floret PO:0009038 PO:0001048 PO:0007130
Palea_4.0-5.0 mm floret Palea_4.0-5.0 mm floret PO:0009038 PO:0001048 PO:0007130
Palea_7.0 mm floret Palea_7.0 mm floret PO:0009038 PO:0001048 PO:0007130
Pistil_10-14 cm panicle Pistil_10-14 cm inflorescence PO:0009030 PO:0007606 PO:0007130
Pistil_14-18 cm panicle Pistil_14-18 cm inflorescence PO:0009030 PO:0007606 PO:0007130
Pistil_5-10 cm panicle Pistil_05-10 cm inflorescence PO:0009030 PO:0007606 PO:0007130
Pollen at bicelluar stage, replicate 1_LMD sample BC-pollen PO:0025281 PO:0001059 PO:0007130
Pollen at tricelluar stage, replicate 1_LMD sample TC-pollen PO:0025281 PO:0001015 PO:0007130
Root_reproductive_00:00 Root_76DAT_24:00 PO:0009005 - PO:0007130
Root_reproductive_12:00 Root_76DAT_12:00 PO:0009005 - PO:0007130
Root_vegetative_00:00 Root_27DAT_24:00 PO:0009005 - PO:0007134
Root_vegetative_12:00 Root_27DAT_12:00 PO:0009005 - PO:0007134
Stem_reproductive_00:00 Stem_83DAT_24:00 PO:0009047 - PO:0007130
Stem_reproductive_12:00 Stem_83DAT_12:00 PO:0009047 - PO:0007130
Stem_ripening_00:00 Stem_90DAT_24:00 PO:0009047 PO:0007010 PO:0007010
Stem_ripening_12:00 Stem_90DAT_12:00 PO:0009047 PO:0007010 PO:0007010
Tapetum at meiosis stage, replicate 1_LMD sample MEI-tapetum PO:0009071 PO:0001009 PO:0007130
Tapetum at tetrad stage, replicate 1_LMD sample TET-tapetum PO:0009071 PO:0001029 PO:0007130
Tapetum at uninuclear stage, replicate 1_LMD sample UN-tapetum PO:0009071 PO:0001013 PO:0007130


=====

Table S1 from [Aya et al.http://www.ncbi.nlm.nih.gov/pubmed/22046259] with GEO IDs of the 176 microarray profiles used the study.

GEO_ID DATA SET ID SAMPLE ID CULTIVATOR
GSM534579 LeafBlade_27DAT_12:00_rep1 Leaf blade_vegetative_12:00* Nipponbare
GSM534580 LeafBlade_27DAT_12:00_rep2 Nipponbare
GSM534581 LeafBlade_27DAT_12:00_rep3 Nipponbare
GSM534582 LeafBlade_27DAT_24:00_rep1 Leaf blade_vegetative_00:00 Nipponbare
GSM534583 LeafBlade_27DAT_24:00_rep2 Nipponbare
GSM534584 LeafBlade_27DAT_24:00_rep3 Nipponbare
GSM534585 LeafBlade_76DAT_12:00_rep1 Leaf blade_reproductive_12:00 Nipponbare
GSM534586 LeafBlade_76DAT_12:00_rep2 Nipponbare
GSM534587 LeafBlade_76DAT_12:00_rep3 Nipponbare
GSM534588 LeafBlade_76DAT_24:00_rep1 Leaf blade_reproductive_00:00 Nipponbare
GSM534589 LeafBlade_76DAT_24:00_rep2 Nipponbare
GSM534590 LeafBlade_76DAT_24:00_rep3 Nipponbare
GSM534591 LeafBlade_125DAT_12:00_rep1 Leaf blade_ripening_12:00 Nipponbare
GSM534592 LeafBlade_125DAT_12:00_rep2 Nipponbare
GSM534593 LeafBlade_125DAT_12:00_rep3 Nipponbare
GSM534594 LeafBlade_125DAT_24:00_rep1 Leaf blade_ripening_00:00 Nipponbare
GSM534595 LeafBlade_125DAT_24:00_rep2 Nipponbare
GSM534596 LeafBlade_125DAT_24:00_rep3 Nipponbare
GSM534597 LeafSheath_27DAT_12:00_rep1 Leaf sheath_vegetative_12:00* Nipponbare
GSM534598 LeafSheath_27DAT_12:00_rep2 Nipponbare
GSM534599 LeafSheath_27DAT_12:00_rep3 Nipponbare
GSM534600 LeafSheath_27DAT_24:00_rep1 Leaf sheath_vegetative_00:00 Nipponbare
GSM534601 LeafSheath_27DAT_24:00_rep2 Nipponbare
GSM534602 LeafSheath_27DAT_24:00_rep3 Nipponbare
GSM534603 LeafSheath_76DAT_12:00_rep1 Leaf sheath_reproductive_12:00 Nipponbare
GSM534604 LeafSheath_76DAT_12:00_rep2 Nipponbare
GSM534605 LeafSheath_76DAT_12:00_rep3 Nipponbare
GSM534606 LeafSheath_76DAT_24:00_rep1 Leaf sheath_reproductive_00:00 Nipponbare
GSM534607 LeafSheath_76DAT_24:00_rep2 Nipponbare
GSM534608 LeafSheath_76DAT_24:00_rep3 Nipponbare
GSM534609 Root_27DAT_12:00_rep1 Root_vegetative_12:00* Nipponbare
GSM534610 Root_27DAT_12:00_rep2 Nipponbare
GSM534611 Root_27DAT_12:00_rep3 Nipponbare
GSM534612 Root_27DAT_24:00_rep1 Root_vegetative_00:00 Nipponbare
GSM534613 Root_27DAT_24:00_rep2 Nipponbare
GSM534614 Root_27DAT_24:00_rep3 Nipponbare
GSM534615 Root_76DAT_12:00_rep1 Root_reproductive_12:00 Nipponbare
GSM534616 Root_76DAT_12:00_rep2 Nipponbare
GSM534617 Root_76DAT_12:00_rep3 Nipponbare
GSM534618 Root_76DAT_24:00_rep1 Root_reproductive_00:00 Nipponbare
GSM534619 Root_76DAT_24:00_rep2 Nipponbare
GSM534620 Root_76DAT_24:00_rep3 Nipponbare
GSM534621 Stem_83DAT_12:00_rep1 Stem_reproductive_12:00* Nipponbare
GSM534622 Stem_83DAT_12:00_rep2 Nipponbare
GSM534623 Stem_83DAT_12:00_rep3 Nipponbare
GSM534624 Stem_83DAT_24:00_rep1 Stem_reproductive_00:00 Nipponbare
GSM534625 Stem_83DAT_24:00_rep2 Nipponbare
GSM534626 Stem_83DAT_24:00_rep3 Nipponbare
GSM534627 Stem_90DAT_12:00_rep1 Stem_ripening_12:00 Nipponbare
GSM534628 Stem_90DAT_12:00_rep2 Nipponbare
GSM534629 Stem_90DAT_12:00_rep3 Nipponbare
GSM534630 Stem_90DAT_24:00_rep1 Stem_ripening_00:00 Nipponbare
GSM534631 Stem_90DAT_24:00_rep2 Nipponbare
GSM534632 Stem_90DAT_24:00_rep3 Nipponbare
GSM534633 Inflorescence_0.6-1.0 mm_rep1 Inflorescence_0.6-1.0 mm* Nipponbare
GSM534634 Inflorescence_0.6-1.0 mm_rep2 Nipponbare
GSM534635 Inflorescence_0.6-1.0 mm_rep3 Nipponbare
GSM534636 Inflorescence_3.0-4.0 mm_rep1 Inflorescence_3.0-4.0 mm Nipponbare
GSM534637 Inflorescence_3.0-4.0 mm_rep2 Nipponbare
GSM534638 Inflorescence_3.0-4.0 mm_rep3 Nipponbare
GSM534639 Inflorescence_5.0-10 mm_rep1 Inflorescence_5.0-10.0 mm Nipponbare
GSM534640 Inflorescence_5.0-10 mm_rep2 Nipponbare
GSM534641 Inflorescence_5.0-10 mm_rep3 Nipponbare
GSM534642 Anther_0.3-0.6 mm_rep1 Anther_0.3-0.6 mm* Nipponbare
GSM534643 Anther_0.3-0.6 mm_rep2 Nipponbare
GSM534644 Anther_0.7-1.0 mm_rep1 Anther_0.7-1.0 mm* Nipponbare
GSM534645 Anther_0.7-1.0 mm_rep2 Nipponbare
GSM534646 Anther_0.7-1.0 mm_rep3 Nipponbare
GSM534647 Anther_1.2-1.5 mm_rep1 Anther_1.2-1.5 mm* Nipponbare
GSM534648 Anther_1.2-1.5 mm_rep2 Nipponbare
GSM534649 Anther_1.2-1.5 mm_rep3 Nipponbare
GSM534650 Anther_1.6-2.0 mm_rep1 Anther_1.6-2.0 mm* Nipponbare
GSM534651 Anther_1.6-2.0 mm_rep2 Nipponbare
GSM534652 Anther_1.6-2.0 mm_rep3 Nipponbare
GSM534653 Pistil_05-10 cm inflorescence_rep1 Pistil_5-10 cm panicle* Nipponbare
GSM534654 Pistil_05-10 cm inflorescence_rep2 Nipponbare
GSM534655 Pistil_05-10 cm inflorescence_rep3 Nipponbare
GSM534656 Pistil_10-14 cm inflorescence_rep1 Pistil_10-14 cm panicle Nipponbare
GSM534657 Pistil_10-14 cm inflorescence_rep2 Nipponbare
GSM534658 Pistil_10-14 cm inflorescence_rep3 Nipponbare
GSM534659 Pistil_14-18 cm inflorescence_rep1 Pistil_14-18 cm panicle Nipponbare
GSM534660 Pistil_14-18 cm inflorescence_rep2 Nipponbare
GSM534661 Pistil_14-18 cm inflorescence_rep3 Nipponbare
GSM534662 Lemma_1.5-2.0 mm floret_rep1 Lemma_1.5-2.0 mm floret* Nipponbare
GSM534663 Lemma_1.5-2.0 mm floret_rep2 Nipponbare
GSM534664 Lemma_1.5-2.0 mm floret_rep3 Nipponbare
GSM534665 Palea_1.5-2.0 mm floret_rep1 Palea_1.5-2.0 mm floret* Nipponbare
GSM534666 Palea_1.5-2.0 mm floret_rep2 Nipponbare
GSM534667 Palea_1.5-2.0 mm floret_rep3 Nipponbare
GSM534668 Lemma_4.0-5.0 mm floret_rep1 Lemma_4.0-5.0 mm floret Nipponbare
GSM534669 Lemma_4.0-5.0 mm floret_rep2 Nipponbare
GSM534670 Lemma_4.0-5.0 mm floret_rep3 Nipponbare
GSM534671 Palea_4.0-5.0 mm floret_rep1 Palea_4.0-5.0 mm floret Nipponbare
GSM534672 Palea_4.0-5.0 mm floret_rep2 Nipponbare
GSM534673 Palea_4.0-5.0 mm floret_rep3 Nipponbare
GSM534674 Lemma_7.0 mm floret_rep1 Lemma_7.0 mm floret Nipponbare
GSM534675 Lemma_7.0 mm floret_rep2 Nipponbare
GSM534676 Lemma_7.0 mm floret_rep3 Nipponbare
GSM534677 Palea_7.0 mm floret_rep1 Palea_7.0 mm floret Nipponbare
GSM534678 Palea_7.0 mm floret_rep2 Nipponbare
GSM534679 Palea_7.0 mm floret_rep3 Nipponbare
GSM534680 Ovary_01 DAF_rep1 Ovary_01 DAF* Nipponbare
GSM534681 Ovary_01 DAF_rep2 Nipponbare
GSM534682 Ovary_01 DAF_rep3 Nipponbare
GSM534683 Ovary_03 DAF_rep1 Ovary_03 DAF Nipponbare
GSM534685 Ovary_03 DAF_rep2 Nipponbare
GSM534686 Ovary_03 DAF_rep3 Nipponbare
GSM534687 Ovary_05 DAF_rep1 Ovary_05DAF Nipponbare
GSM534688 Ovary_05 DAF_rep2 Nipponbare
GSM534689 Ovary_05 DAF_rep3 Nipponbare
GSM534690 Ovary_07 DAF_rep1 Ovary_07 DAF Nipponbare
GSM534691 Ovary_07 DAF_rep2 Nipponbare
GSM534692 Ovary_07 DAF_rep3 Nipponbare
GSM534693 Embryo_07 DAF_rep1 Embryo_07 DAF* Nipponbare
GSM534694 Embryo_07 DAF_rep2 Nipponbare
GSM534695 Embryo_07 DAF_rep3 Nipponbare
GSM534696 Embryo_10 DAF_rep1 Embryo_10 DAF Nipponbare
GSM534697 Embryo_10 DAF_rep2 Nipponbare
GSM534698 Embryo_10 DAF_rep3 Nipponbare
GSM534699 Embryo_14 DAF_rep1 Embryo_14 DAF Nipponbare
GSM534700 Embryo_14 DAF_rep2 Nipponbare
GSM534701 Embryo_14 DAF_rep3 Nipponbare
GSM534702 Embryo_28 DAF_rep1 Embryo_28 DAF Nipponbare
GSM534703 Embryo_28 DAF_rep2 Nipponbare
GSM534704 Embryo_28 DAF_rep3 Nipponbare
GSM534705 Embryo_42 DAF_rep1 Embryo_42 DAF Nipponbare
GSM534706 Embryo_42 DAF_rep2 Nipponbare
GSM534707 Embryo_42 DAF_rep3 Nipponbare
GSM534708 Endosperm_07 DAF_rep1 Endosperm_07 DAF* Nipponbare
GSM534709 Endosperm_07 DAF_rep2 Nipponbare
GSM534710 Endosperm_07 DAF_rep3 Nipponbare
GSM534711 Endosperm_10 DAF_rep1 Endosperm_10 DAF Nipponbare
GSM534712 Endosperm_10 DAF_rep2 Nipponbare
GSM534713 Endosperm_10 DAF_rep3 Nipponbare
GSM534714 Endosperm_14 DAF_rep1 Endosperm_14 DAF Nipponbare
GSM534715 Endosperm_14 DAF_rep2 Nipponbare
GSM534716 Endosperm_14 DAF_rep3 Nipponbare
GSM534717 Endosperm_28 DAF_rep1 Endosperm_28 DAF Nipponbare
GSM534718 Endosperm_28 DAF_rep2 Nipponbare
GSM534719 Endosperm_28 DAF_rep3 Nipponbare
GSM534720 Endosperm_42 DAF_rep1 Endosperm_42 DAF Nipponbare
GSM534721 Endosperm_42 DAF_rep2 Nipponbare
GSM534722 Endosperm_42 DAF_rep3 Nipponbare
GSM722590 Pre_anther_rep1 Anther at premeiosis stage, LMD sample* Nipponbare
GSM722591 Pre_anther_rep2 Nipponbare
GSM722592 Pre_anther_rep3 Nipponbare
GSM722593 MEI-microspore-rep1 Microspore at meiosis stage, LMD sample* Nipponbare
GSM722594 MEI-microspore-rep2 Nipponbare
GSM722595 MEI-microspore-rep3 Nipponbare
GSM722596 MEI-microspore-rep4 Nipponbare
GSM722597 TET-microspore-rep1 Microspore at tetrad stage, LMD sample* Nipponbare
GSM722598 TET-microspore-rep2 Nipponbare
GSM722599 TET-microspore-rep3 Nipponbare
GSM722600 UN-microspore-rep1 Microspore at uninuclear stage, LMD sample* Nipponbare
GSM722601 UN-microspore-rep2 Nipponbare
GSM722602 UN-microspore-rep3 Nipponbare
GSM722603 BC-pollen-rep1 Pollen at bicelluar stage,LMD sample* Nipponbare
GSM722604 BC-pollen-rep2 Nipponbare
GSM722605 BC-pollen-rep3 Nipponbare
GSM722606 BC-pollen-rep4 Nipponbare
GSM722607 BC-pollen-rep5 Nipponbare
GSM722608 BC-pollen-rep6 Nipponbare
GSM722609 BC-pollen-rep7 Nipponbare
GSM722610 BC-pollen-rep8 Nipponbare
GSM722611 TC-pollen-rep1 Pollen at tricelluar stage, LMD sample* Nipponbare
GSM722612 TC-pollen-rep2 Nipponbare
GSM722613 TC-pollen-rep3 Nipponbare
GSM722614 MEI-tapetum-rep1 Tapetum at meiosis stage, LMD sample* Nipponbare
GSM722615 MEI-tapetum-rep2 Nipponbare
GSM722616 MEI-tapetum-rep3 Nipponbare
GSM722617 TET-tapetum-rep1 Tapetum at tetrad stage, LMD sample* Nipponbare
GSM722618 TET-tapetum-rep2 Nipponbare
GSM722619 TET-tapetum-rep3 Nipponbare
GSM722620 UN-tapetum-rep1 Tapetum at uninuclear stage, LMD sample* Nipponbare
GSM722621 UN-tapetum-rep2 Nipponbare
GSM722622 UN-tapetum-rep3 Nipponbare
Retrieved from "http://wiki.plantontology.org/index.php?title=Oryza_sativa_LCM_Aya_et_al,_2011&oldid=25712"