Difference between revisions of "Anatomy and morphology related trait (TO:0000017)"

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(Created page with '==[https://sourceforge.net/tracker/?func=detail&aid=3519672&group_id=76834&atid=835557 anatomy and morphology related trait (TO:0000017)]== current def'n: This category belongs t…')
 
 
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*new term and def'n: '''subterranean tuber anatomy and morphology trait ''' (TO:0000742): A tuber anatomy and morphology trait (TO:0000741) which is associated with a subterranean tuber (PO:0004547).
 
*new term and def'n: '''subterranean tuber anatomy and morphology trait ''' (TO:0000742): A tuber anatomy and morphology trait (TO:0000741) which is associated with a subterranean tuber (PO:0004547).
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==[https://sourceforge.net/tracker/?func=detail&aid=3487511&group_id=76834&atid=835557 tuber traits]==
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Terms requested by Syngenta (in bold):
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'''tuber''' (PO:0004543): An enlarged storage branch (PO:0025073)
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 +
probably should be: subterranean tuber (PO:0004547): A tuber (PO:0004543) that is below ground
 +
 +
'''tuber epidermis''' (PO:0025046): A portion of shoot axis epidermis that is part of a tuber (PO:0004543).
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probably should be: subterranean tuber epidermis (PO:0025048): A tuber epidermis (PO:0025046) that is part of a subterranean tuber (PO:0004547).
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 +
tuber axillary vegetative bud (PO:0025040): An axillary vegetative bud (PO:0004712) that is part of a tuber (PO:0004543).  related synonym: '''tuber eye'''
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 +
probably should be: subterranean tuber axillary vegetative bud (PO:0025042): A tuber axillary vegetative bud (PO:0025040) that is part of a subterranean tuber (PO:0004547).
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 +
broad synonym:'''tuber eye'''
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 +
tuber storage parenchyma (PO:0025036): A portion of storage parenchyma (PO:0025035) that is part of a tuber (PO:0004543). exact synonym:'''tuber flesh'''
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probably should be: subterranean tuber storage parenchyma (PO:0025038): A portion of tuber storage parenchyma (PO:0025036) that is part of a subterranean tuber (PO:0004547).
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Narrow Synonym: '''potato tuber''' flesh
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===requested terms and suggested def'ns:===
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tuber shape- The shape of the tuber
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tuber size- The physical size of the tuber
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 +
tuber appearance- The overall appearance of the tuber. A 1-9 scale is used, with 1 the lowest score (very poor) and 9 the highest (excellent)
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tuber mass- The mass of the tuber
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[[File:Tuber.png]]
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In the PO: A '''tuber''' is a '''branch''' which is a '''shoot axis''';  shoot axis is_a '''plant_axis''';  which is_a '''plant organ''' part_of the '''shoot system'''
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* '''tuber shape'''
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Proposed new term and def'n:
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'''subterranean tuber shape''' (TO:0000743): A subterranean tuber trait (TO:0000742) which is associated with the shape of a subterranean tuber (PO:0004547).
 +
 +
broad synonym: tuber shape
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 +
refer to PATO shape: PATO:0000052
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 +
* '''tuber size'''
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Proposed new term and def'n: '''subterranean tuber size''' (TO:0000744): A subterranean tuber trait (TO:0000742) which is associated with the size of a subterranean tuber (PO:0004547).
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 +
refer to PATO size: PATO:0000117
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broad synonym: tuber size
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* '''tuber appearance'''
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Proposed new term and def'n: '''subterranean tuber appearance''' (TO:0000745): A subterranean tuber trait (TO:0000742) which is associated with the appearance of a subterranean tuber (PO:0004547).
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 +
comment: A 1-9 scale is used to score the overall appearance of the tuber, with 1 the lowest score (very poor) and 9 the highest (excellent)
 +
 +
broad synonym: tuber appearance
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 +
No PATO reference for refer to appearance
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 +
* '''tuber mass'''
 +
Proposed new term and def'n: '''subterranean tuber mass''' (TO:0000746): A subterranean tuber trait (TO:0000742) which is associated with the mass of a subterranean tuber (PO:0004547).
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 +
broad synonym: tuber mass
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 +
refer to PATO mass: PATO:0000125

Latest revision as of 05:16, 20 April 2012

anatomy and morphology related trait (TO:0000017)

current def'n: This category belongs to traits associated with changes in the anatomy or structure of the plant at organ, tissue or cellular level.

proposed def'n: A plant trait (TO:0000387) which is associated with the anatomy or morphology of a plant anatomical entity (PO:0000003) or one or more constituent cellular components (GO:0005575) contained therein.

comment: Includes traits of plant structures (PO:0009011) such as plant cell (PO:0009002), plant organ (PO:0009008), portion of plant tissue (PO:0009007), vascular system (PO:0000034), whole plant (PO:0000003) and seed (PO:0009010) as well as those of plant anatomical spaces (PO:0025117), portions of plant substance (PO:0025161).

note: The PO ids in the comments do not go into the Dbxrefs

New children of anatomy and morphology related trait (TO:0000017)

This is a valid hierarchy based on the Plant Ontology and will provide a parent for the potato tuber terms requested below.

  • new child term and def'n: plant organ trait (TO:0000736): An anatomy and morphology trait (TO:0000017) which is associated with a plant organ (PO:0009008).
  • new term and def'n: plant axis anatomy and morphology trait (TO:0000738): plant organ anatomy and morphology trait (TO:0000736) which is associated a plant axis (PO:0025004).
  • new child term and def'n: shoot axis anatomy and morphology trait (TO:0000739): A plant axis trait (TO:0000738) which is associated with a shoot axis (PO:0025029).
  • new term and def'n: branch anatomy and morphology trait (TO:0000740): A shoot axis anatomy and morphology trait (TO:0000739) which is associated with a branch (PO:0025073).
  • new term and def'n: tuber anatomy and morphology trait (TO:0000741): A branch anatomy and morphology trait (TO:0000740) which is associated with a tuber (PO:0004543).
  • new term and def'n: subterranean tuber anatomy and morphology trait (TO:0000742): A tuber anatomy and morphology trait (TO:0000741) which is associated with a subterranean tuber (PO:0004547).

tuber traits

Terms requested by Syngenta (in bold):

tuber (PO:0004543): An enlarged storage branch (PO:0025073)

probably should be: subterranean tuber (PO:0004547): A tuber (PO:0004543) that is below ground

tuber epidermis (PO:0025046): A portion of shoot axis epidermis that is part of a tuber (PO:0004543).

probably should be: subterranean tuber epidermis (PO:0025048): A tuber epidermis (PO:0025046) that is part of a subterranean tuber (PO:0004547).

tuber axillary vegetative bud (PO:0025040): An axillary vegetative bud (PO:0004712) that is part of a tuber (PO:0004543). related synonym: tuber eye

probably should be: subterranean tuber axillary vegetative bud (PO:0025042): A tuber axillary vegetative bud (PO:0025040) that is part of a subterranean tuber (PO:0004547).

broad synonym:tuber eye

tuber storage parenchyma (PO:0025036): A portion of storage parenchyma (PO:0025035) that is part of a tuber (PO:0004543). exact synonym:tuber flesh

probably should be: subterranean tuber storage parenchyma (PO:0025038): A portion of tuber storage parenchyma (PO:0025036) that is part of a subterranean tuber (PO:0004547).

Narrow Synonym: potato tuber flesh


requested terms and suggested def'ns:

tuber shape- The shape of the tuber

tuber size- The physical size of the tuber

tuber appearance- The overall appearance of the tuber. A 1-9 scale is used, with 1 the lowest score (very poor) and 9 the highest (excellent)

tuber mass- The mass of the tuber

Tuber.png

In the PO: A tuber is a branch which is a shoot axis; shoot axis is_a plant_axis; which is_a plant organ part_of the shoot system


  • tuber shape

Proposed new term and def'n: subterranean tuber shape (TO:0000743): A subterranean tuber trait (TO:0000742) which is associated with the shape of a subterranean tuber (PO:0004547).

broad synonym: tuber shape

refer to PATO shape: PATO:0000052

  • tuber size

Proposed new term and def'n: subterranean tuber size (TO:0000744): A subterranean tuber trait (TO:0000742) which is associated with the size of a subterranean tuber (PO:0004547).

refer to PATO size: PATO:0000117

broad synonym: tuber size

  • tuber appearance

Proposed new term and def'n: subterranean tuber appearance (TO:0000745): A subterranean tuber trait (TO:0000742) which is associated with the appearance of a subterranean tuber (PO:0004547).

comment: A 1-9 scale is used to score the overall appearance of the tuber, with 1 the lowest score (very poor) and 9 the highest (excellent)

broad synonym: tuber appearance

No PATO reference for refer to appearance

  • tuber mass

Proposed new term and def'n: subterranean tuber mass (TO:0000746): A subterranean tuber trait (TO:0000742) which is associated with the mass of a subterranean tuber (PO:0004547).

broad synonym: tuber mass

refer to PATO mass: PATO:0000125

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