New terms and obsolete terms-April 2012 Release

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New plant anatomical entity terms

awn (PO:0025349)

palea awn (PO:0025350)

glume awn (PO:0025351)

tubercle (PO:0025352)

bud areole (PO:0025353)

cladode (PO:0025354)

corm (PO:0025355)

bulb (PO:0025356)

pneumatophore (PO:0025357)

pneumatorhiza (PO:0025358)

sorus (PO:0025359)

coenosorus (PO:0025360)

leaf tendril (PO:0025361)

leaflet tendril (PO:0025362)

leaf apex tendril (PO:0025363)

branch tendril (PO:0025364)

stem apex tendril (PO:0025365)

leaf rachis tendril (PO:0025366)

prophyll tendril (PO:0025367)

arillode (PO:0025378)

intercellular space (PO:0025379)

leaf mesophyll intercellular space (PO:0025380)

spongy mesophyll intercellular space (PO:0025381)

substomatal cavity (PO:0025382)

phyllome sinus (PO:0025383)

leaf sinus (PO:0025384)

cutin (PO:0025385)

cuticular wax (PO:0025386)

plant cuticle proper (PO:0025387)

epicuticular wax (PO:0025388)

intercuticular wax (PO:0025389)

free ending veinlet (PO:0025390)

lamina areole (PO:0025391)

leaf lamina areole (PO:0025392)

pappus (PO:0025393)

pappus element (PO:0025394)

floral organ (PO:0025395)

phyllome lamina (PO:0025396)

palisade mesophyll intercellular space (PO:0025397)

phyllome substomatal cavity (PO:0025398)

leaf substomatal cavity (PO:0025399)

phyllome adaxial meristem (PO:0025400)

leaf adaxial meristem (PO:0025401)

phyllome abaxial meristem (PO:0025402)

leaf abaxial meristem (PO:0025403)

phyllome marginal meristem (PO:0025404)

leaf marginal meristem (PO:0025405)

sieve element (PO:0025406)

plant fiber cell (PO:0025407)

primary vascular tissue (PO:0025408)

secondary vascular tissue (PO:0025409)

axial system (PO:0025410)

ray system (PO:0025411)

albuminous cell (PO:0025412)

primary vein (PO:0025413)

secondary thickening meristem (PO:0025414)

sieve cell (PO:0025415)

sieve tube (PO:0025416)

vessel (PO:0025417)

sclerid (PO:0025418)

septate fiber tracheid (PO:0025419)

septate libriform fiber cell (PO:0025420)

septate phloem fiber cell (PO:0025421)

gelatinous fiber (PO:0025422)

phyllome plate meristem: (PO:0025428)

leaf plate meristem: (PO:0025429)

phyllome anlagen: (PO:0025430)

leaf anlagen (PO:0025431)

cotyledon anlagen (PO:0025432)

root anlagen: (PO:0025433)

petiole vascular bundle (PO:0025434)

shoot axis cork cambium (PO:0025435)

root cork cambium (PO:0025436)

shoot axis vascular cambium (PO:0025437)

root vascular cambium (PO:0025438)

cambial zone (PO:0025439)

shoot axis cambial zone (PO:0025440)

root cambial zone (PO:0025441)

stem secondary thickening meristem (PO:0025442)

root secondary thickening meristem (PO:0025443)

primary xylem tracheary element (PO:0025444)

secondary xylem tracheary element (PO:0025445)

primary xylem tracheid (PO:0025446)

secondary xylem tracheid (PO:0025447)

primary xylem vessel member (PO:0025448)

secondary xylem vessel member (PO:0025449)

primary xylem vessel (PO:0025450)

secondary xylem vessel (PO:0025451)

primary phloem sieve element (PO:0025452)

secondary phloem sieve element (PO:0025453)

primary phloem sieve cell (PO:0025454)

primary phloem sieve tube element (PO:0025455)

secondary phloem sieve cell (PO:0025456)

secondary phloem sieve tube element (PO:0025457)

transfer companion cell (PO:0025458)

ordinary companion cell (PO:0025459)

intermediary companion cell (PO:0025460)

early wood tracheary element (PO:0025461)

late wood tracheary element (PO:0025462)

reaction wood (PO:0025472)

compression wood (PO:0025473)

tension wood (PO:0025474)

Renamed terms: PAE

cuticle (PO:0000022) to plant cuticle (PO:0000022)

awn (PO:0006032) > lemma awn

spore (PO:0025017) > plant spore

inflorescence lateral meristem (PO:0009105) > inflorescence branch meristem

ear lateral meristem (PO:0009110) > ear inflorescence branch meristem

tassel lateral meristem (PO:0009107) > tassel inflorescence branch meristem

leaf vein (PO:0020138) > leaf lamina vein (plus other leaf veins)

vessel member (PO:0002003) > xylem vessel member

vessel (PO:0025417) > xylem vessel

wood parenchyma (PO:0004532) > secondary xylem parenchyma

axial wood parenchyma (PO:0004533) > ray secondary xylem parenchyma

ray wood parenchyma (PO:0004534) > axial secondary xylem parenchyma

wood parenchyma cell (PO:0004525) > secondary xylem parenchyma cell

ray wood parenchyma cell (PO:0004527) > ray secondary xylem parenchyma cell

upright wood ray parenchyma cell (PO:0004528) > upright ray secondary xylem parenchyma cell

procumbent wood ray parenchyma cell (PO:0004529) > procumbent ray secondary xylem parenchyma cell

axial wood parenchyma cell (PO:0004526) > axial secondary xylem parenchyma cell

embryo axis (PO:0019018) > plant embryo axis

cambial initial (PO:0000295) > cambial initial cell

epidermal initial (PO:0000349) > epidermal initial cell

epidermal rhizoid initial (PO:0030068) > epidermal rhizoid initial cell

fusiform initial (PO:0000079) > fusiform initial cell

gametophore bud initial (PO:0030083) > gametophore bud initial cell

non-vascular leaf initial (PO:0030087) > non-vascular leaf initial cell

protonema side branch initial (PO:0030067) > protonema side branch initial cell

protonema sub-apical initial (PO:0030086) > protonema sub-apical initial cell

protonemal side branch rhizoid initial (PO:0030077) > protonemal side branch rhizoid initial cell

ray initial (PO:0000082) > ray initial cell

stomatal initial (PO:0000062) > stomatal initial cell

New plant structure development stage terms

life of whole plant (PO:0025337)

collective plant structure development stage (PO:0025338)

plant organ development stage (PO:0025339)

gametophyte vegetative development stage (PO:0025340)

gametophyte reproductive development stage (PO:0025341)

gametophyte dormant stage (PO:0025342)

gametophyte senescent stage (PO:0025343)

gametophore reproductive whole plant development stage (PO:0025344)

gametophore vegetative whole plant development stage (PO:0025345)

thallus reproductive whole plant development stage (PO:0025346)

thallus vegetative whole plant development stage (PO:0025347)

trichome development stage (PO:0025368)

seed trichome development stage (PO:0025369)

seed trichome initiation stage (PO:0025370)

seed trichome elongation stage (PO:0025371)

seed trichome secondary wall biosynthesis stage (PO:0025372)

seed trichome maturation stage (PO:0025373)

seed dormant stage (PO:0025374)

plant spore stage (PO:0025375)

plant spore dormant stage (PO:0025376)

plant embryo dormant stage (PO:0025377)

plant tissue development stage (PO:0025423)

vascular tissue development stage (PO:0025424)

xylem development stage (PO:0025425)

phloem development stage (PO:0025426)

secondary xylem development stage (PO:0025427)

cell division stage of secondary xylem (PO:0025463)

cell expansion stage of secondary xylem (PO:0025464)

secondary cell wall formation stage of secondary xylem (PO:0025465)

cell death stage of secondary xylem (PO:0025466)

tracheary element death stage of secondary xylem (PO:0025467)

secondary xylem parenchyma cell death stage of secondary xylem (PO:0025468)

cell differentiation stage of secondary xylem (PO:0025469)

coleorhiza emergence stage (PO:0025475)

Renamed terms: PSDS

Changed all the terms that had "stages" in their names to "stage" and changed "developmental" to "development" for about 10 terms.

whole plant growth stage (PO:0007033) > whole plant development stage

gametophyte phase (PO:0028003) > gamethophyte development stage

sporophyte phase (PO:0028002) > sporophyte development stage

A vegetative growth (PO:0007134) > sporophyte vegetative development stage

B reproductive growth (PO:0007130) > sporophyte reproductive development stage

C senescence (PO:0007017) > sporophyte senscent stage

D dormancy (PO:0007132) > sporophyte vegetative dormant stage

protonema phase (PO:0030006) > protonema whole plant development stage

embryo development stages (PO:0007631) > plant embryo stage

A zygotic stage (PO:0001097) > plant zygote stage

New synonyms

This is only to highlight synonyms that are substantially different than the primary term name (e.g., cone as a synonym of strobilus) or are otherwise noteworthy.

Added 333 new synonyms from FNA term glossary to existing PO terms.

Added synonyms: lateral meristem - lateral growth meristem; shoot lateral meristem - shoot lateral growth meristem; root lateral meristem - root lateral growth meristem

Added broad synonyms to 34 terms that had plant in the name, so they would show up in searches for an exact match (e.g., "embryo" as synonym of "plant embryo", "organ" as synonym of "plant organ").

Added "leaf venation" as related synonym of leaf vascular system (PO:0000036)

Added diaspore as broad synonym to seed (PO:0009010), fruit (PO:0009001), plant spore (PO:0025017), corm (PO:0025355), bulb (PO:0025356), and tuber (PO:0004543).

Added "leaf margin blastozon" as exact synonym to leaf marginal meristem.

Added "midrib" and "mid rib" as broad synonyms to both costa (PO:0030072) and midvein (PO:0020139)

Added colony (related), clonal colony (related), genet (broad), ramet (broad) as synonyms of whole plant (PO:0000003).

Added "ramet" as broad synonym of gametophore (PO:0030018).

Added "simple strobilus", "compound strobilus", and "strobili" as synonyms of strobilus (PO:0025083).

Added "SAM" as synonym of shoot apical meristem (PO:0020148).

Got rid of old GRO synonyms on sporophyte dormant stage These synonyms were not relevant to the term, and the GRO ontology is no longer in use.

Merged terms

plant structure development stage (PO:0007021) into plant growth and development stage (PO:0009012) -- plant structure development stage is primary name

Obsolete terms

axial cell (PO:0000081), consider fiber cell (PO:0025407), sieve element (PO:0025406), tracheary element (PO:0000290)

xylem element (PO:0000273), consider tracheary element (PO:0000290) and xylem fiber cell (PO:0000274)