Difference between revisions of "CRIBI- Grape Genomics"

Latest revision as of 16:19, 30 April 2012

Interdepartmental Biotechnology Centre of the University of Padua

10-4-11:

abbreviation:GG

database: Grape Genome Database

description: Grape Genome Database

object: Locus identifier

example_id: GG:VIT_10s0116g00060

local_id_syntax:

url_example: !url_syntax:

Re:email discussion of annotation files (10-10-11)

example: VIT_10s0003g05820- has different set of PO annotations on their site.

Annotations in file "gg_anatomy.assoc2" to fruit valve which are derived by IEA to TAIR:Locus:2198621. This is actually a TAIR "accession #"

see link to: AT1G20140

Link for Grape Genome Site: Grape Genome

Link on the Grape Genome site to query site Ontologies

@@ Line 1: / Line 1: @@
-[[http://www.cribi.unipd.it/index.php/Genomics CRIBI]]
+[http://www.cribi.unipd.it/index.php/Genomics CRIBI]
 Interdepartmental Biotechnology Centre of the University of Padua
@@ Line 6: / Line 6: @@
 abbreviation:GG
 database: Grape Genome Database
 description: Grape Genome Database
 object: Locus identifier
 example_id: GG:VIT_10s0116g00060
 local_id_syntax:
 generic_url: http://genomes.cribi.unipd.it
@@ Line 18: / Line 24: @@
 url_example: !url_syntax:
+Re:email discussion of annotation files (10-10-11)
+example: VIT_10s0003g05820- has different set of PO annotations on their site.
+Annotations in file "gg_anatomy.assoc2" to fruit valve which are derived by IEA to TAIR:Locus:2198621.  This is actually a TAIR "accession #"
+see link to: [http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G20140 AT1G20140]
 http://genomes.cribi.unipd.it/cgi-bin/pqs2/report.pl?gene_name=VIT_10s0116g00060&release=v1
-Link for Grape Genome Site:
+Link for Grape Genome Site: [http://genomes.cribi.unipd.it/cgi-bin/pqs2/query.pl?release=v1 Grape Genome]
 Link on the Grape Genome site to query site [http://genomes.cribi.unipd.it/cgi-bin/pqs2/query.pl?release=v1#cribi_po_str:0 Ontologies]
+[[Category:Collaborations]]