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| | Acceptance of the minutes from the [[POC_Conf._Call_6-28-11]]? | | Acceptance of the minutes from the [[POC_Conf._Call_6-28-11]]? |
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| − | =User requests still open on Source Forge; PGDSO =
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| − | ==[https://sourceforge.net/tracker/index.php?func=detail&aid=3035688&group_id=76834&atid=835555 terms for seed trichome development stages]==
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| − | Open since 07-28-2010
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| − | ===Request===
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| − | The following terms have been requested for cotton fiber development (their structure and defintions):
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| − | seed development stages PO: 0001170
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| − | ---[part_of]Seed hair development stages
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| − | ---[part_of]seed hair initiation stage: The earliest histological
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| − | evidence of seed hair initiation, ie, a change in the orientation of cell
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| − | division in the ovule epidermises occurs at or just before anthesis. (Ruan
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| − | YL, 2003, Plant Cell 15:952-964) [Source:PMID: 12671090].
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| − |
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| − | ---[part_of]seed hair elongation stage: A period of rapid elongation
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| − | of hair initials without cell division for 16-25 days. (Lee JJ, 2007,
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| − | Annals of Botany 100:1391-1401 and Ruan YL, 2003, Plant Cell 15:952-964)
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| − | [Sources:PMID: 17905721, PMID: 12671090].
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| − |
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| − | ---[part_of] seed hair secondary wall biosynthesis stage: A phase of
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| − | the massive amounts of secondary cell wall cellulose synthesis. (Lee JJ,
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| − | 2007, Annals of Botany 100:1391-1401 and Ruan YL, 2003, Plant Cell
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| − | 15:952-964) [Sources: PMID:17905721, PMID:12671090].
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| − | ---[part_of]seed hair maturation stage: A period of seed hair
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| − | maturation from 50 to 60 days post-anthesis (DPA).
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| − | (Lee JJ, 2007, Annals of Botany 100:1391-1401 and Ruan YL, 2003, Plant
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| − | Cell 15:952-964) [Sources: PMID:17905721, PMID:12671090].
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| − | ===Suggested terms and definitions:===
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| − | '''Do we want to use stage or phase throughout PGDSO?'''
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| − | '''seed development stages (PO:0001170)'''
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| − | '''Current definition:''' Stages of seed development, from fertilization to the dry or quiescent state. [source: TAIR:ki]
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| − | '''Proposed name and definition:''' seed development stage: A plant structure development stage that begins with fertilization and ends with seed maturation.
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| − | Comment: Only used for seed plants. Some seeds may enter a period of dormancy after seed development is complete.
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| − | is_a plant structure development stage; part_of sporophyte phase; subset for gymnosperms and angiosperms; add relation: seed participates_in seed development stage
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| − | ====New terms and proposed definitions:====
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| − | '''seed trichome development stage:''' A plant structure development stage that is part of a seed development stage during which one or more seed trichomes develop.
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| − | is_a plant structure development stage; part_of seed development stage; add seed trichome participates_in seed trichome development stage
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| − | synonym: seed hair development stage
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| − |
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| − |
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| − | seed trichome initiation stage: The earliest histological
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| − | evidence of seed hair initiation, ie, a change in the orientation of cell
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| − | division in the ovule epidermises occurs at or just before anthesis. (Ruan
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| − | YL, 2003, Plant Cell 15:952-964) [Source:PMID: 12671090].
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| − |
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| − | synonym: seed hair initiation stage
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| − |
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| − |
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| − | seed trichome elongation stage: A period of rapid elongation
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| − | of hair initials without cell division for 16-25 days. (Lee JJ, 2007,
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| − | Annals of Botany 100:1391-1401 and Ruan YL, 2003, Plant Cell 15:952-964)
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| − | [Sources:PMID: 17905721, PMID: 12671090].
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| − |
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| − | synonym: seed hair elongation stage
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| − |
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| − |
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| − | seed trichome secondary wall biosynthesis stage: A phase of
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| − | the massive amounts of secondary cell wall cellulose synthesis. (Lee JJ,
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| − | 2007, Annals of Botany 100:1391-1401 and Ruan YL, 2003, Plant Cell
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| − | 15:952-964) [Sources: PMID:17905721, PMID:12671090].
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| − |
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| − | synonym: seed hair secondary wall biosynthesis stage
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| − |
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| − |
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| − | seed trichome maturation stage: A period of seed hair
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| − | maturation from 50 to 60 days post-anthesis (DPA).
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| − | (Lee JJ, 2007, Annals of Botany 100:1391-1401 and Ruan YL, 2003, Plant
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| − | Cell 15:952-964) [Sources: PMID:17905721, PMID:12671090].
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| − |
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| − | synonym: seed hair maturation stage
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| − |
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| − | ==[http://sourceforge.net/tracker/index.php?func=detail&aid=2812238&group_id=76834&atid=835555 tuber growth and development stages]==
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| − | This item has been open on SF since 6/2009
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| − | I have a bunch of potato genes which are expressed in different tuber developmental stages (e.g. the potato pmt gene is expressed in small sprouts only (http://www.ncbi.nlm.nih.gov/pubmed/16088399).
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| − | Suggested stages:
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| − | -sprout development (does this correspond to tube axillary bud development? Should come after tuber maturation)
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| − | -tuber initiation
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| − | -tuber growth
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| − | -tuber maturation
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| − | How we work these in will depend on restructuring of PGDSO
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| − | l development in legumes (Plant Physiol, March 2003, Vol. 131, pp. 911-926
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| | =Upcoming meetings 2011:= | | =Upcoming meetings 2011:= |
POC meeting, Webex Conference Call; Date: Tuesday June 14th, 2011 10am (PDT)
In attendance:
POC members:
Absent:
Collaborators:
Acceptance of the minutes from the POC_Conf._Call_6-28-11?
Upcoming meetings 2011:
Botany 2011 Meeting [Botany 2011] St. Louis, MO at the Chase Park Plaza, July 9-13.
Societies participating:
Society for Economic Botany, the American Fern Society (AFS), the American Society of Plant Taxonomists (ASPT), and the Botanical Society of America (BSA).
Anybody going??
* ICBO 2011 Second International Conference on Biomedical Ontology
July 26-30, 2011
Buffalo, New York
ICBO
LC is co-organizing the workshop "From Fins to Limbs to Leaves: Facilitating anatomy ontology interoperability"
along with Melissa Haendel, Chris Mungall, Alan Ruttenberg, David Osumi-Sutherland.
Full-Day Workshops Schedule:
July 26 9am-6pm The Ontological Representation of Adverse Events: Working with Multiple Biomedical Ontologies
July 27 8.30am-4pm Facilitating Anatomy Ontology Interoperability
July 26 6.30pm-9pm Evening Workshop: Common Logic
July 27 4pm-8pm Evening Workshop: Doctoral and Post-Doctoral Consortium
- LC will attend and represent the PO. Invite other plant people?
*Plant Biology 2011, Aug 6-10th, Minneapolis, Minn
Plant Biology 2011
For inclusion on the program memory stick and in the program book, abstracts must be submitted by May 27.
Gramene will be putting together a workshop again, focusing on pathways. LC and PJ will present a PO poster.
TAIR (Kate Dreher) is organizing an Outreach Booth and we are invited to take part.
* International Botanical Congress (IBC2011)
July 23rd-30th 2011, Melbourne, Australia
Registration is open Important dates
Symposium 'Bio-Ontologies for the Plant Sciences' under the Genetics, Genomics and Bioinformatics theme, wiil be held on Thursday, 27 July, from 13:30 to 15:30.
Dennis, Alejandra, Pankaj and Ramona are planning to attend.
See IBC 2011 Bio-Ontologies Symposium wiki page for more details
Next meeting scheduled for Tuesday, July 12th, 2011 at 10am PDT/1pm EDT
