Difference between revisions of "Summary of Changes to PO Jan2011"
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Added new terms thorn, prickle, spine | Added new terms thorn, prickle, spine | ||
| − | Reorganization of PSO | + | Reorganization of PSO top level terms: |
| − | + | Added plant anatomical entity as a new root node. Plant structure (old term), plant anatomical space and portion of plant structure are new children of this node. | |
| + | |||
| + | Children of plant anatomical space include stomatal pore, micropyle and stomium. Cuticle is the only child of portion of plant substance, but later could add children like latex, xylem sap, etc. | ||
Revision as of 16:52, 22 December 2010
Back to Jan2010 Release Page
(Under Construction)
Summary of changes
October 2010 through January 2011
Curators (in alphabetical order): Cooper, Laurel D. (1); Elser, Justin (1); Gandolfo, Maria A. (2); Jaiswal, Pankaj (1), Mungall, Christopher (3); Smith, Barry (4); Stevenson, Dennis W. (5); Walls, Ramona L. (5)
1. Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 2. Department of Plant Biology, Cornell University, Ithaca, NY 3. Lawrence Berkeley National Lab, Berkeley, CA 4. Department of Philosophy, University at Buffalo, NY 5. The New York Botanical Garden, Bronx, NY
Overview
Priorities for this release
1. Compliance with Obo Foundry Principles (is_a parents for all terms, BFO compliance)
2. Incorporate user requests
3. Add terms for non-angisperm structures (begin, mostly will be done in next release)
4. Update PGDSO (begin, mostly will be done in next release)
List of changes
Redefined flower. Made it is_a reproductive shoot system (new term). inflorescence has_part flower
>>this change actually went in last release, not sure if it was documented, because it was a last minute change.
Added has_part relationship
Added TraitNet slim - could be used as a generic slim for plant ecologists
Merged PSO and PGDSO into one file. Still have separate name spaces. Little difference for users, mostly a convenience for the editors.
All terms in PSO now have is_a parents. A few in PGDSO without, but that my undergo major restructuring.
Began work on user term requests. About half way done -- will finish during next round of revisions. Added terms for Musa (Generation Challenge Program), legumes (Austin Mast, FSU) and TraitNet. Started working on root terms from Rich Zobel
Began a collaboration with Physco group (Stefan Rensing and Daniel Lang)
New terms (as parents to terms without): gynoecium ridge, dehiscence zone,
Obsoleted terms that were parts of cells: pollen tube, pollen tube tip, unicellular trichome branch, root hair, root hair tip, papilla. Requested in GO. Added new terms: pollen tube cell, papilla cell, multicellular trichome branch cell.
reworked definitions of embryo, egg cell, sperm cell, plus added new terms archegonium egg cell, embryo sac egg cell, antheridium sperm cell, pollen sperm cell.
New term primordium. Made all definitions of types of primordia consistent. Removed is_a relations between primordia and the structures they develop into. Instead added relations that the structures develop from the primordia.
Trichomes: added top level term trichome as a synonym for the different types of trichomes. Also have multicellular trichome, trichome cell (synonym: unicellular trichome), and multicellular trichome branch (is a trichome cell).
Fixed definitions and parents for parts of the root tip.
Added new terms thorn, prickle, spine
Reorganization of PSO top level terms:
Added plant anatomical entity as a new root node. Plant structure (old term), plant anatomical space and portion of plant structure are new children of this node.
Children of plant anatomical space include stomatal pore, micropyle and stomium. Cuticle is the only child of portion of plant substance, but later could add children like latex, xylem sap, etc.
