Difference between revisions of "PAG 2011 Collaborators Workshop"
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The Plant Ontology is being utilized as they develop a Maize Gene Atlas. They are working on a large set of Nimblegen and RNA_Seq expression data, from 61 tissues, at various plant growth stages. These data will be added to the Plant Ontology's existing annotations. | The Plant Ontology is being utilized as they develop a Maize Gene Atlas. They are working on a large set of Nimblegen and RNA_Seq expression data, from 61 tissues, at various plant growth stages. These data will be added to the Plant Ontology's existing annotations. | ||
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Revision as of 17:36, 10 December 2010
Date and Time:
Sunday, January 16th, Late Morning to include a buffet lunch
Time: 10:30-1:00 pm (will wrap up in time to get to 1:30 sessions)
Where: Town and Country Hotel, Windsor Room
See list of other potential speakers and invitees PAG 2011 PO Workshop Invitees and Speakers
Summary and Objectives:
- We have about 4 or 5 speakers from groups that use the PO or share annotations with us, or who we would like to develop collaborations with
- The goal is to show a range of uses and highlight the utility of the Plant Ontology to the plant science community.
- Each speaker will have about 10 minutes, including time for questions, (~ 5-10 slides)
- We will have a 'working lunch' where folks can mingle and continue discussions
Agenda:
10:30am: Introduction and Welcome (Laurel Cooper, Coordinator, Plant Ontology Consortium)
10:40am: Mary Schaeffer, MaizeGDB
Title: TBA
The Plant Ontology is being utilized as they develop a Maize Gene Atlas. They are working on a large set of Nimblegen and RNA_Seq expression data, from 61 tissues, at various plant growth stages. These data will be added to the Plant Ontology's existing annotations.
Others:
- Genevestigator: contact? (support@genevestigator.com) Ontologies
- VirtualPlant who, use their "contact us" form? Virtual plant
- Shoshi Kikuchi, National Institute of Agrobiological Sciences, Japan
- Helen Parkinson- Array Express EBI
- Nottingham Arabidopsis NASC Ontology page
- OryzaBase: to: Yukiko Yamazaki
- TraitNet: Coordinators Farshid Ahrestani (fa2260@columbia.edu) and Dan Bunker (dbunker@njit.edu)
- CIMMYT, Mexico Generation Challenge Program: Rosemary Shrestha, Elizabeth Arnaud? see: GCP workshop
- BRENDA to:project leader Prof. Dr. Dietmar Schomburg
- UniProt "contact us" page ? Rachel Huntley, someone doing plant annotations from SwissProt
- BAR: Nicholas Provert and Rohan Patel
