Difference between revisions of "PAG 2011 Collaborators Workshop"
| Line 39: | Line 39: | ||
These groups will be represented at PAG: | These groups will be represented at PAG: | ||
| − | + | * [http://www.gramene.org/plant_ontology/ Gramene] See: [http://intl-pag.org/19/19-gramene.html Gramene workshop at PAG] | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | * [http://www.gramene.org/plant_ontology/ Gramene] | ||
| − | |||
* [http://www.plexdb.org/index.php Plex DB] Roger P. Wise? | * [http://www.plexdb.org/index.php Plex DB] Roger P. Wise? | ||
| Line 52: | Line 46: | ||
* Physcomitrella group: [http://plantco.de/ Stefan Rensing], University of Freiburg, Germany and Daniel Lang, | * Physcomitrella group: [http://plantco.de/ Stefan Rensing], University of Freiburg, Germany and Daniel Lang, | ||
| − | see: [http://www.cosmoss.org/ Cosmoss], the ''Physcomitrella patens'' resource site. | + | see: [http://www.cosmoss.org/ Cosmoss], the ''Physcomitrella patens'' resource site. see: [http://intl-pag.org/19/19-lower.html Non-seed plant workshop] |
| − | see | + | * [http://www.rosaceae.org/ Genome Database for Roseae] (GDR), Univ of Washington see [http://intl-pag.org/19/19-fruits.html Fruit and Nut workshop] |
| − | * [http:// | + | * [http://qifa.ncpgr.cn/ Qifa Zhang] Rice Gene Expression Atlas paper |
* Brian Smith White- NCBI [http://intl-pag.org/19/19-ncbi.html NCBI Workshop] | * Brian Smith White- NCBI [http://intl-pag.org/19/19-ncbi.html NCBI Workshop] | ||
| Line 70: | Line 64: | ||
* TAIR email: curator@arabidopsis.org | * TAIR email: curator@arabidopsis.org | ||
| − | *[http://msbarker.com/res.htm Michael Barker] | + | *[http://msbarker.com/res.htm Michael Barker], see:[http://intl-pag.org/19/19-speciation.html Speciation Genomics Workshop] |
| − | see:[http://intl-pag.org/19/19-speciation.html Speciation Genomics Workshop] | + | |
| + | |||
| + | * [http://solgenomics.net/tools/onto/index.pl Solanaceae Genome network (SGN)]; Lukas Mueller + Naama Menda; see [http://intl-pag.org/19/19-solan.html Solanaceae Workshop] | ||
| + | |||
Revision as of 23:58, 29 October 2010
This page is under construction.....
When:
Proposed Time: Sunday Late Morning to include lunch
Time 10:30-1:00 pm (will wrap up in time to get to 1:30 sessions)
Where: Town and Country Hotel, Room TBA
What:
The plan will be to have about 5 speakers from groups that use the PO or send annotations to us.
The goal is to show a range of types of uses and highlight the utility of the PO to the plant science community.
Each speaker will have about 10 minutes, including time for questions, (~ 5-10 slides)?
We will plan to have a 'working lunch' where folks can mingle and continue discussions
who:
* MaizeGDB: Carolyn Lawrence, Mary Schaeffer, Jack Gardiner.
Mary Schaeffer has said that their group can come and she has offered to speak about how the PO is being utilized as they develop a Maize Gene Atlas. They are working on a large set of Nimblegen and RNA_Seq expression data, from 61 tissues, at various plant growth stages.
They are working on initially mapping the expressed sequences to coordinates, and by inference then, to gene models.
They anticipate being able to provide associations for gene models expressed highly to the PO. This will be a substantial number of associations.
Mary has suggested that she could discuss how each 'tissue' is annotated to the PO terms.
Other Groups to Invite:
These groups will be represented at PAG:
- Plex DB Roger P. Wise?
- Blake Meyer (meyers@dbi.udel.edu) see International Arabidopsis Informatics Consortium (IAIC) Workshop
- Physcomitrella group: Stefan Rensing, University of Freiburg, Germany and Daniel Lang,
see: Cosmoss, the Physcomitrella patens resource site. see: Non-seed plant workshop
- Genome Database for Roseae (GDR), Univ of Washington see Fruit and Nut workshop
- Qifa Zhang Rice Gene Expression Atlas paper
- Brian Smith White- NCBI NCBI Workshop
- Helen Parkinson- Array Express EBI
- Genevestigator: contact ? (support@genevestigator.com) Ontologies
- VirtualPlant who, use their "contact us" form? Virtual plant
- TAIR email: curator@arabidopsis.org
- Solanaceae Genome network (SGN); Lukas Mueller + Naama Menda; see Solanaceae Workshop
Others:?
- Nottingham Arabidopsis NASC Ontology page
- SoyBase- Rex Nelson?
- OryzaBase: to: Yukiko Yamazaki
- PlantTribes: to: PI: Claude dePamphilis (Penn State) cwd3@psu.edu
- TraitNet: Coordinators Farshid Ahrestani (fa2260@columbia.edu) and Dan Bunker (dbunker@njit.edu)
- CIMMYT, Mexico Generation Challenge Program: Rosemary Shretha
- BRENDA to:project leader Prof. Dr. Dietmar Schomburg
- UniProt "contact us" page
- BAR: Nicholas Provert and Rohan Patel
- Trish Whetzel and BioPortal-
