Links to sites using the PO

A to F

AgBase- only has annotations to GO

ARTADE2DB- link not working?

Bioportal

Biolod.org example page: non-secretory trichome see also: plant structure - link not working?

BRENDA- mostly uses BTO, but old version of PO, TO and EO are on it

Compositae Genomics Project: Morphdb

cosmoss- No PO on their site

EBI OLS

G to L

Gene Ontology- No PO or TO?

Gramene- http://archive.gramene.org/plant_ontology/

Gramene Biomart- can filter by PO and GO

Cyverse- mirror site of planteome, otherwise not sure how it is being used otherwise

ISA

Live Plant Image Group- has links to browse PO, but not sure how it is used

M to P

MAGIC- Fu et al (2014) MAGIC: access portal to a cross-platform gene expression compendium for maize. Bioinformatics. doi: 10.1093/bioinformatics/btt739

• 'MAize Gene expressIon Compendium'. It is a web based interface for exploring and analyzing a comprehensive maize-specific cross-platform expression compendium. This compendium was constructed by collecting, homogenizing and formally annotating publicly available microarrays from Gene Expression Omnibus (GEO), and ArrayExpress.
• plant ontology annotations

MaizeGDB

Maize cell Genomics database- JCVI

Maize cell Genomics database

Manually Curated Database of Rice Proteins

Metalife

Metabolomic Repository Bordeaux MeRy

PO integration in MSI standards

NASC Ontology page

OntoBrowser

OntoFox

OBO Foundry

OntoBee

Plantsystematics.org

Phenopsis

PRIDE- In query, there are a list of parameter types to choose from. If you pick PO, you get a list of terms.

The Integrated Databases of Plant Omics Data

Plant Phenome

R to Z

RARGEII

Riken

Solanaceae Genome network (SGN)

SuperFamily - need to address some issues here, not an "Arabidopsis Plant Ontology".

Traitnet

Uniprot keywords ???

Virtual plant

Others?

not actually using the PO but should be:

Bio-Array Resource for Plant Biology (BAR)

Crop Ontology

Genevestigator

CRIBI and the Query page