Difference between revisions of "Oryza sativa, IMP, Gramene Genes"

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−
This dataset was annotated as part of the [http://www.phenotypercn.org/?p=1099 Plant Phenotype Pilot Project]
+
This data set was annotated as part of the [http://www.phenotypercn.org/?p=1099 Plant Phenotype Pilot Project]
−
 
 
−
----
 
−
Legends:
 
−
#Gene ID: Gramene gene locus ID
 
−
#Cultivar: Nipponbare
 
−
#Gene data: Derived from supplementary tables ST2-ST25
 
−
#PO:annotations: best match to the sample description in the following tables. If required the PO annotations to growth stages were done to #both the organ/structure specific development stages and the whole plant growth stages. Every sample has PO whole plant growth stage #annotations.
 
 
----
 
----
 
'''PO anatomy and growth stage annotations table:'''
 
'''PO anatomy and growth stage annotations table:'''
Line 13: Line 6:
 
| align="center" style="background:#f0f0f0;"|'''Gene Symbol'''
 
| align="center" style="background:#f0f0f0;"|'''Gene Symbol'''
 
| align="center" style="background:#f0f0f0;"|'''Gene Name'''
 
| align="center" style="background:#f0f0f0;"|'''Gene Name'''
−
| align="center" style="background:#f0f0f0;"|'''PO:ID Anatomy '''
+
| align="center" style="background:#f0f0f0;"|'''PO:ID'''
−
| align="center" style="background:#f0f0f0;"|'''PO:Name Anatomy'''
+
| align="center" style="background:#f0f0f0;"|'''PO:Name'''
−
| align="center" style="background:#f0f0f0;"|'''PO:ID growth stage'''
+
| align="center" style="background:#f0f0f0;"|'''PO:Aspect'''
−
| align="center" style="background:#f0f0f0;"|'''PO:Name growth stage'''
 
 
| align="center" style="background:#f0f0f0;"|'''PMID:'''
 
| align="center" style="background:#f0f0f0;"|'''PMID:'''
 
| align="center" style="background:#f0f0f0;"|'''comments'''
 
| align="center" style="background:#f0f0f0;"|'''comments'''
 
|-
 
|-
−
| 0101319||APL1||ADP-glucose Pyrophosphorylase large subunit 1|| PO:0009066||leaf sheath||||||16275672||||
+
|0101319||APL1||ADP-glucose Pyrophosphorylase large subunit 1|| PO:0009066||leaf sheath||anatomy||16275672||||
 +
|-
 +
|0800010||AID1||Anther Indehiscence1||PO:0000003||  whole plant  ||anatomy||15247409||||
 +
|-
 +
|0800010||AID1||Anther Indehiscence1||PO:0005001||basal axillary shoot system||anatomy||15247409||||
 +
|-
 +
|0800010||AID1||Anther Indehiscence1||PO:0009051||spikelet||anatomy||15247409||||
 +
|-
 +
|0800010||AID1||Anther Indehiscence1||PO:0007073||2 formation of axillary shoot stage||development||15247409||||
 +
|-
 +
|0800010||AID1||Anther Indehiscence1||PO:0007016||whole plant flowering stage||development||15247409||||
 +
|-
 +
|60058||APO1||Aberrant Panicle Organization||PO:0000003||whole plant||anatomy||15950602||||
 +
|-
 +
|60058||APO1||Aberrant Panicle Organization||PO:0000230||inflorescence meristem||anatomy||15950602||||
 +
|-
 +
|60058||APO1||Aberrant Panicle Organization||PO:0006321||primary inflorescence branch||anatomy||15950602||||
 +
|-
 +
|60058||APO1||Aberrant Panicle Organization||PO:0006322||second order inflorescence branch||anatomy||15950602||||
 +
|-
 +
|60058||APO1||Aberrant Panicle Organization||PO:0009025||vascular leaf||anatomy||15950602||||
 +
|-
 +
|60058||APO1||Aberrant Panicle Organization||PO:0009051||spikelet||anatomy||15950602||||
 +
|-
 +
|60058||APO1||Aberrant Panicle Organization||PO:0009081||inflorescence branch||anatomy||15950602||||
 +
|-
 +
|60058||APO1||Aberrant Panicle Organization||PO:0001050 ||leaf development stage||development||15950602||||
 +
|-
 +
|60058||APO1||Aberrant Panicle Organization||PO:0001083 ||inflorescence development stage||development||15950602||||
 +
|-
 +
|60068||BC1||BRITTLE CULM 1||PO:0001051 ||1 leaf initiation stage||development||12953108||||
 +
|-
 +
|60068||BC1||BRITTLE CULM 1||PO:0001053||3 leaf fully expanded stage||development||12953108||||
 +
|-
 +
|60068||BC1||BRITTLE CULM 1||PO:0007006|| IL.00 inflorescence just visible stage||development||12953108||||
 +
|-
 +
|60068||BC1||BRITTLE CULM 1||PO:0007023||IE.04 inflorescence fully emerged from flag leaf sheath stage||development||12953108||||
 +
|-
 +
|60068||BC1||BRITTLE CULM 1||PO:0007089|| stem elongation stage||development||12953108||||
 +
|-
 +
|60068||BC1||BRITTLE CULM 1||PO:0007109|| SE.99 maximum stem length reached stage||development||12953108||||
 +
|-
 +
|60070||BC3||BRITTLE CULM 3||PO:0009047||stem||anatomy||GR_gene:5651||||
 +
|-
 +
|60070||BC3||BRITTLE CULM 3||PO:0007041|| inflorescence emergence stage||development||GR_gene:5651||||
 +
|-
 +
|60073||BC6||BRITTLE CULM 6||PO:0000003|| whole plant||anatomy||GR_gene:5933
 +
|-
 +
|60073||BC6||BRITTLE CULM 6||PO:0007131||seedling development stage|||development||GR_gene:5933
 +
|-
 +
|80018||BLE3||BRASSINOLIDE ENHANCED GENE 3||PO:0000003||whole plant||anatomy||16808934||||
 +
|-
 +
|80018||BLE3||BRASSINOLIDE ENHANCED GENE 3||PO:0006341||primary shoot system||anatomy||16808934||||
 +
|-
 +
|80018||BLE3||BRASSINOLIDE ENHANCED GENE 3||PO:0025025||root system||anatomy||16808934||||
 +
|-
 +
|80018||BLE3||BRASSINOLIDE ENHANCED GENE 3||PO:0000003||whole plant||anatomy||16808934||||
 +
|-
 +
|80018||BLE3||BRASSINOLIDE ENHANCED GENE 3||PO:0025073||branch||anatomy||16808934||||
 +
|-
 +
|80018||BLE3||BRASSINOLIDE ENHANCED GENE 3||PO:0007520||root development stage||development||16808934||||
 +
|-
 +
|101269||COIN||Cold inducible|| PO:0000003||whole plant||anatomy||17549515||||
 +
|-
 +
|101269||COIN||Cold inducible||PO:0009002||plant cell||anatomy||17549515||||
 +
|-
 +
|20064||CPS1||ent-copalyl diphosphate synthase 1 ||PO:0009006||shoot system||anatomy||16861806||||
 +
|-
 +
|20065||CPS2||ent-copalyl diphosphate synthase 1 ||PO:0009006||shoot system||anatomy||16861806||||
 +
|-
 +
|20066||CPS4||ent-copalyl diphosphate synthase 1 ||PO:0009006||shoot system||anatomy||16861806||||
 +
|-
 +
|80030||CPT1||Coleoptile Phototropism|| PO:0020033 ||coleoptile||anatomy|| 15598797||||
 +
|-
 +
|80030||CPT1||Coleoptile Phototropism|| PO:0025025||root system||anatomy|| 15598797||||
 +
|-
 +
|60184||D1||dwarf-1 ||PO:0005005||shoot internode||anatomy||PMID:12237405||||
 +
|-
 +
|60184||D1||dwarf-1 ||PO:0006341||primary shoot system||anatomy||PMID:12237405||||
 +
|-
 +
|60184||D1||dwarf-1 ||PO:0009001||fruit||anatomy||PMID:12237405||||
 +
|-
 +
|60184||D1||dwarf-1 ||PO:0009025||vascular leaf||anatomy||PMID:12237405||||
 +
|-
 +
|60184||D1||dwarf-1 ||PO:0009039||glume||anatomy||PMID:12237405||||
 +
|-
 +
|60184||D1||dwarf-1 ||PO:0009047||stem||anatomy||PMID:12237405||||
 +
|-
 +
|60184||D1||dwarf-1 ||PO:0009049||inflorescence||anatomy||PMID:12237405||||
 +
|-
 +
|60192||D10||DWARF KIKEIBANSHINRIKI||PO:0000003||whole plant||anatomy||GR_gene:5792||||
 +
|-
 +
|60192||D10||DWARF KIKEIBANSHINRIKI||PO:0005001||basal axillary shoot system||anatomy||GR_gene:5792||||
 +
|-
 +
|60192||D10||DWARF KIKEIBANSHINRIKI||PO:0007073||2 formation of axillary shoot stage||development||GR_gene:5792||||
 +
|-
 +
|60192||D10||DWARF KIKEIBANSHINRIKI||PO:0007130||sporophyte reproductive stage||development||GR_gene:5792||||
 +
|-
 +
|60192||D10||DWARF KIKEIBANSHINRIKI||PO:0009006||shoot system||anatomy||GR_gene:5792||||
 +
|-
 +
|60192||D10||DWARF KIKEIBANSHINRIKI||PO:0009049||inflorescence||anatomy||GR_gene:5792||||
 +
|-
 +
|60193||D11||DWARF SHINKANEAIKOKU OR NOHRIN 28||PO:0009001||fruit||anatomy||PMID:15705958||||
 +
|-
 +
|60193||D11||DWARF SHINKANEAIKOKU OR NOHRIN 28||PO:0009006||shoot system||anatomy||PMID:15705958||||
 +
|-
 +
|60193||D11||DWARF SHINKANEAIKOKU OR NOHRIN 28||PO:0025500||whole plant fruit development stage||development||PMID:15705958||||
 +
|-
 +
|60186||D3||DWARF BUNKETSUWAITO TILLERING||PO:0000003||whole plant||anatomy||PMID:15659436||||
 +
|-
 +
|60186||D3||DWARF BUNKETSUWAITO TILLERING||PO:0005001||basal axillary shoot system||anatomy||PMID:15659436||||
 +
|-
 +
|60186||D3||DWARF BUNKETSUWAITO TILLERING||PO:0006341||primary shoot system||anatomy||PMID:15659436||||
 +
|-
 +
|60213||D35||dwarf-35 ||PO:0006341||primary shoot system||anatomy||PMID:15075394||||
 +
|-
 +
|60226||D61||DWARF 61||PO:0009006||shoot system||anatomy||PMID:11006334||||
 +
|-
 +
|101251||DCL1||Dicer like 1 ||PO:0000003||whole plant||anatomy||PMID:16126864||||
 +
|-
 +
|101251||DCL1||Dicer like 1 ||PO:0000042||shoot-borne root||anatomy||PMID:16126864||||
 +
|-
 +
|101251||DCL1||Dicer like 1 ||PO:0006341||primary shoot system||anatomy||PMID:16126864||||
 +
|-
 +
|101251||DCL1||Dicer like 1 ||PO:0007112||1 main shoot growth stage||development||PMID:16126864||||
 +
|-
 +
|101251||DCL1||Dicer like 1 ||PO:0007133||leaf production stage||development||PMID:16126864||||
 +
|-
 +
|101251||DCL1||Dicer like 1 ||PO:0007520||root development stage||development||PMID:16126864||||
 +
|-
 +
|101251||DCL1||Dicer like 1 ||PO:0009006||shoot system||anatomy||PMID:16126864||||
 +
|-
 +
|101251||DCL1||Dicer like 1 ||PO:0009025||vascular leaf||anatomy||PMID:16126864||||
 +
|-
 +
|60233||DL||DROOPING LEAF||PO:0001050 ||leaf development stage||development||PMID:14729915||||
 +
|-
 +
|60233||DL||DROOPING LEAF||PO:0020139||leaf midvein||anatomy||PMID:14729915||||
 +
|-
 +
|80029||DOS||delay of the onset of senescence||PO:0001054||4 leaf senescence stage||development||PMID:16778011||||
 +
|-
 +
|80017||DWARF||BRASSINOSTEROID-DEFICIENT DWARF 1||PO:0001050||leaf development stage||development||PMID:12445121||||
 +
|-
 +
|80017||DWARF||BRASSINOSTEROID-DEFICIENT DWARF 1||PO:0007089||stem elongation stage||development||PMID:12445121||||
 +
|-
 +
|80017||DWARF||BRASSINOSTEROID-DEFICIENT DWARF 1||PO:0009002||plant cell||anatomy||PMID:12445121||||
 +
|-
 +
|80017||DWARF||BRASSINOSTEROID-DEFICIENT DWARF 1||PO:0009002||plant cell||anatomy||PMID:12445121||||
 +
|-
 +
|80017||DWARF||BRASSINOSTEROID-DEFICIENT DWARF 1||PO:0025527||shoot system development stage||development||PMID:12445121||||
 +
|-
 +
|80016||DWARF4||DWARF4||PO:0000003||whole plant||anatomy||PMID:16369540||||
 +
|-
 +
|80016||DWARF4||DWARF4||PO:0007133||leaf production stage||development||PMID:16369540||||
 +
|-
 +
|80016||DWARF4||DWARF4||PO:0009001||fruit||anatomy||PMID:16369540||||
 +
|-
 +
|80016||DWARF4||DWARF4||PO:0009006||shoot system||anatomy||PMID:16369540||||
 +
|-
 +
|80016||DWARF4||DWARF4||PO:0009025||vascular leaf||anatomy||PMID:16369540||||
 +
|-
 +
|80016||DWARF4||DWARF4||PO:0009049||inflorescence||anatomy||PMID:16369540||||
 +
|-
 +
|60320||EUI1||ELONGATED UPPERMOST INTERNODE 1||PO:0001083 ||inflorescence development stage||development||PMID:16399803||||
 +
|-
 +
|60320||EUI1||ELONGATED UPPERMOST INTERNODE 1||PO:0005005||shoot internode||anatomy||PMID:16399803||||
 +
|-
 +
|60333||FON1||FLORAL ORGAN NUMBER 1 ||PO:0000003||whole plant||anatomy||PMID:16511358||||
 +
|-
 +
|60333||FON1||FLORAL ORGAN NUMBER 1 ||PO:0000229||flower meristem||anatomy||PMID:16511358||||
 +
|-
 +
|60333||FON1||FLORAL ORGAN NUMBER 1 ||PO:0007600 ||floral organ differentiation stage||development||PMID:16511358||||
 +
|-
 +
|60333||FON1||FLORAL ORGAN NUMBER 1 ||PO:0025395||floral organ||anatomy||PMID:16511358||||
 +
|-
 +
|80005||FOR1||floral organ regulator 1 ||PO:0007600 ||floral organ differentiation stage||development||PMID:14750524||||
 +
|-
 +
|80005||FOR1||floral organ regulator 1 ||PO:0009051||spikelet||anatomy||PMID:14750524||||
 +
|-
 +
|80005||FOR1||floral organ regulator 1 ||PO:0025395||floral organ||anatomy||PMID:14750524||||
 +
|-
 +
|60339||FZP||FRIZZY PANICLE||PO:0007615 ||flower development stage||development||PMID:12835399||||
 +
|-
 +
|60339||FZP||FRIZZY PANICLE||PO:0009039||glume||anatomy||PMID:12835399||||
 +
|-
 +
|60339||FZP||FRIZZY PANICLE||PO:0025073||branch||anatomy||PMID:12835399||||
 +
|-
 +
|60366||GH2||GOLD HULL AND INTERNODE 2||PO:0006000||caryopsis hull||anatomy||PMID:16443696||||
 +
|-
 +
|60366||GH2||GOLD HULL AND INTERNODE 2||PO:0007010||whole plant fruit ripening stage||development||PMID:16443696||||
 +
|-
 +
|60366||GH2||GOLD HULL AND INTERNODE 2||PO:0007025||IE.00 inflorescence tip just visible above flag leaf sheath stage||development||PMID:16443696||||
 +
|-
 +
|60366||GH2||GOLD HULL AND INTERNODE 2||PO:0009037||lemma||anatomy||PMID:16443696||||
 +
|-
 +
|60366||GH2||GOLD HULL AND INTERNODE 2||PO:0009038||palea||anatomy||PMID:16443696||||
 +
|-
 +
|80024||GID2||GA-insensitive dwarf 2 ||PO:0000003||whole plant||anatomy||PMID:12649483||||
 +
|-
 +
|80024||GID2||GA-insensitive dwarf 2 ||PO:0007133||leaf production stage||development||PMID:12649483||||
 +
|-
 +
|80024||GID2||GA-insensitive dwarf 2 ||PO:0009006||shoot system||anatomy||PMID:12649483||||
 +
|-
 +
|80024||GID2||GA-insensitive dwarf 2 ||PO:0009025||vascular leaf||anatomy||PMID:12649483||||
 +
|-
 +
|80062||GIF1||GRAIN INCOMPLETE FILLING 1 ||PO:0009001||fruit||anatomy||PMID:18820698||||
 +
|-
 +
|80062||GIF1||GRAIN INCOMPLETE FILLING 1 ||PO:0025500 ||whole plant fruit development stage||development||PMID:18820698||||
 +
|-
 +
|80027||HTD1||High-Tillering Dwarf1 ||PO:0000003||whole plant||anatomy||PMID:17092317||||
 +
|-
 +
|80027||HTD1||High-Tillering Dwarf1 ||PO:0004709||axillary bud||anatomy||PMID:17092317||||
 +
|-
 +
|80027||HTD1||High-Tillering Dwarf1 ||PO:0006341||primary shoot system||anatomy||PMID:17092317||||
 +
|-
 +
|80027||HTD1||High-Tillering Dwarf1 ||PO:0007073 ||2 formation of axillary shoot stage||development||PMID:17092317||||
 +
|-
 +
|80027||HTD1||High-Tillering Dwarf1 ||PO:0009025||vascular leaf||anatomy||PMID:17092317||||
 +
|-
 +
|20067||KS1||Ent-kaurene synthase 1 ||PO:0009006||shoot system||anatomy||PMID:17141283||||
 +
|-
 +
|20068||KS2||Ent-kaurene synthase 2||PO:0009006||shoot system||anatomy||PMID:17141283||||
 +
|-
 +
|20070||KS4||Ent-kaurene synthase 4||PO:0009006||shoot system||anatomy||PMID:17141283||||
 +
|-
 +
|20071||KS5||Ent-kaurene synthase 5||PO:0009006||shoot system||anatomy||PMID:17141283||||
 +
|-
 +
|20072||KS6||Ent-kaurene synthase 6||PO:0009006||shoot system||anatomy||PMID:17141283||||
 +
|-
 +
|20073||KS7||Ent-kaurene synthase 7||PO:0009006||shoot system||anatomy||PMID:17141283||||
 +
|-
 +
|60493||LAX||LAX PANICLE||PO:0000003||whole plant||anatomy||PMID:7896104||||
 +
|-
 +
|60493||LAX||LAX PANICLE||PO:0001083 ||inflorescence development stage||development||PMID:7896104||||
 +
|-
 +
|101253||Log||Lonely Guy||PO:0000003||whole plant||anatomy||PMID:17287810||||
 +
|-
 +
|101253||Log||Lonely Guy||PO:0000229||flower meristem||anatomy||PMID:17287810||||
 +
|-
 +
|101253||Log||Lonely Guy||PO:0001083||inflorescence development stage||development||PMID:17287810||||
 +
|-
 +
|101253||Log||Lonely Guy||PO:0004010||meristematic cell||anatomy||PMID:17287810||||
 +
|-
 +
|101253||Log||Lonely Guy||PO:0009030||carpel||anatomy||PMID:17287810||||
 +
|-
 +
|101253||Log||Lonely Guy||PO:0009049||inflorescence||anatomy||PMID:17287810||||
 +
|-
 +
|101253||Log||Lonely Guy||PO:0009081||inflorescence branch||anatomy||PMID:17287810||||
 +
|-
 +
|101253||Log||Lonely Guy||PO:0020148||shoot apical meristem||anatomy||PMID:17287810||||
 +
|-
 +
|80009||LSI1||Low silicon rice 1||PO:0000003||whole plant||anatomy||PMID:16572174||||
 +
|-
 +
|80009||LSI1||Low silicon rice 1||PO:0009001||fruit||anatomy||PMID:16572174||||
 +
|-
 +
|80037||LSI2||Low silicon rice 2||PO:0006000||caryopsis hull||anatomy||PMID:17625566||||
 +
|-
 +
|80037||LSI2||Low silicon rice 2||PO:0009001||fruit||anatomy||PMID:17625566||||
 +
|-
 +
|80015||MADS1||MADS1||PO:0000003||whole plant||anatomy||PMID:16146529||||
 +
|-
 +
|80015||MADS1||MADS1||PO:0006000||caryopsis hull||anatomy||PMID:16146529||||
 +
|-
 +
|80015||MADS1||MADS1||PO:0007130||sporophyte reproductive stage||development||PMID:16146529||||
 +
|-
 +
|80015||MADS1||MADS1||PO:0009025||vascular leaf||anatomy||PMID:16146529||||
 +
|-
 +
|80015||MADS1||MADS1||PO:0009029||stamen||anatomy||PMID:16146529||||
 +
|-
 +
|80015||MADS1||MADS1||PO:0009030||carpel||anatomy||PMID:16146529||||
 +
|-
 +
|80041||MADS13||MADS13||PO:0000003||whole plant||anatomy||PMID:10528264||||
 +
|-
 +
|80041||MADS13||MADS13||PO:0001083 ||inflorescence development stage||development||PMID:10528264||||
 +
|-
 +
|80025||MADS18||MADS18||PO:0005005||shoot internode||anatomy||PMID:15299121||||
 +
|-
 +
|80025||MADS18||MADS18||PO:0006341||primary shoot system||anatomy||PMID:15299121||||
 +
|-
 +
|80025||MADS18||MADS18||PO:0007016||whole plant flowering stage||development||PMID:15299121||||
 +
|-
 +
|80021||MADS22||MADS22||PO:0007615 ||flower development stage||development||PMID:15682279||||
 +
|-
 +
|80021||MADS22||MADS22||PO:0009039||glume||anatomy||PMID:15682279||||
 +
|-
 +
|80019||MDP1||MADS-domain-containing protein 1 ||PO:0007045||coleoptile emergence stage||development||PMID:16827922||||
 +
|-
 +
|80019||MDP1||MADS-domain-containing protein 1 ||PO:0007520||root development stage||development||PMID:16827922||||
 +
|-
 +
|80019||MDP1||MADS-domain-containing protein 1 ||PO:0020039||leaf lamina||anatomy||PMID:16827922||||
 +
|-
 +
|80019||MDP1||MADS-domain-containing protein 1 ||PO:0020127||primary root||anatomy||PMID:16827922||||
 +
|-
 +
|80042||MEL1||MEIOSIS ARRESTED AT LEPTOTENE 1||PO:0007624||B meiosis of megaspore mother cell stage||development||PMID:17675402||||
 +
|-
 +
|80042||MEL1||MEIOSIS ARRESTED AT LEPTOTENE 1||PO:0020047||microsporocyte||anatomy||PMID:17675402||||
 +
|-
 +
|80008||MOC1||Monoculm 1||PO:0005001||basal axillary shoot system||anatomy||PMID:12687001||||
 +
|-
 +
|80008||MOC1||Monoculm 1||PO:0007073 ||2 formation of axillary shoot stage||development||PMID:12687001||||
 +
|-
 +
|61178||MSP1||MULTIPLE SPOROCYTE 1||PO:0000003||whole plant||anatomy||PMID:12897248||||
 +
|-
 +
|61178||MSP1||MULTIPLE SPOROCYTE 1||PO:0006204||sporocyte||anatomy||PMID:12897248||||
 +
|-
 +
|61178||MSP1||MULTIPLE SPOROCYTE 1||PO:0007624||B meiosis of megaspore mother cell stage||development||PMID:12897248||||
 +
|-
 +
|61178||MSP1||MULTIPLE SPOROCYTE 1||PO:0025313||tapetum||anatomy||PMID:12897248||||
 +
|-
 +
|80011||OSNOP||no pollen||PO:0000003||whole plant||anatomy||PMID:15952069||||
 +
|-
 +
|80011||OSNOP||no pollen||PO:0007016||whole plant flowering stage||development||PMID:15952069||||
 +
|-
 +
|80011||OSNOP||no pollen||PO:0025281||pollen||anatomy||PMID:15952069||||
 +
|-
 +
|100119||PAIR1||HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1||PO:0000084||plant sperm cell||anatomy||PMID:15031413||||
 +
|-
 +
|100119||PAIR1||HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1||PO:0007016 ||whole plant flowering stage||development||PMID:15031413||||
 +
|-
 +
|100119||PAIR1||HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1||PO:0007134||sporophyte vegetative stage||development||PMID:15031413||||
 +
|-
 +
|100119||PAIR1||HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1||PO:0007624||B meiosis of megaspore mother cell stage||development||PMID:15031413||||
 +
|-
 +
|100119||PAIR1||HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1||PO:0020094||plant egg cell||anatomy||PMID:15031413||||
 +
|-
 +
|100120||PAIR2||HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 2||PO:0000003||whole plant||anatomy||PMID:14758540||||
 +
|-
 +
|61182||PLA2||PLASTOCHRON2||PO:0000003||whole plant||anatomy||PMID:16461585||||
 +
|-
 +
|61182||PLA2||PLASTOCHRON2||PO:0001050||leaf development stage||development||PMID:16461585||||
 +
|-
 +
|61182||PLA2||PLASTOCHRON2||PO:0001051||1 leaf initiation stage||development||PMID:16461585||||
 +
|-
 +
|61182||PLA2||PLASTOCHRON2||PO:0005001||basal axillary shoot system||anatomy||PMID:16461585||||
 +
|-
 +
|61182||PLA2||PLASTOCHRON2||PO:0007112||1 main shoot growth stage||development||PMID:16461585||||
 +
|-
 +
|61182||PLA2||PLASTOCHRON2||PO:0007130||sporophyte reproductive stage||development||PMID:16461585||||
 +
|-
 +
|61182||PLA2||PLASTOCHRON2||PO:0009006||shoot system||anatomy||PMID:16461585||||
 +
|-
 +
|80013||PNH1||PINHEAD 1||PO:0005020||vascular bundle||anatomy||PMID:12000455||||
 +
|-
 +
|80013||PNH1||PINHEAD 1||PO:0009011||plant structure||anatomy||PMID:12000455||||
 +
|-
 +
|80013||PNH1||PINHEAD 1||PO:0009025||vascular leaf||anatomy||PMID:12000455||||
 +
|-
 +
|80061||PROG1||PROSTRATE GROWTH 1||PO:0000003||whole plant||anatomy||PMID:18820699||||
 +
|-
 +
|80061||PROG1||PROSTRATE GROWTH 1||PO:0006341||primary shoot system||anatomy||PMID:18820699||||
 +
|-
 +
|80061||PROG1||PROSTRATE GROWTH 1||PO:0009001||fruit||anatomy||PMID:18820699||||
 +
|-
 +
|101187||PSS1||pollen semi-sterile 1||PO:0005011||anther dehiscence zone||anatomy||PMID:17279367||||
 +
|-
 +
|101187||PSS1||pollen semi-sterile 1||PO:0020094||plant egg cell||anatomy||PMID:17279367||||
 +
|-
 +
|101187||PSS1||pollen semi-sterile 1||PO:0025281||pollen||anatomy||PMID:17279367||||
 +
|-
 +
|100117||RCN1||Putative phosphatidylethanolamine-binding protein||PO:0000003||whole plant||anatomy||PMID:12148532||||
 +
|-
 +
|100117||RCN1||Putative phosphatidylethanolamine-binding protein||PO:0006321||primary inflorescence branch||anatomy||PMID:12148532||||
 +
|-
 +
|100117||RCN1||Putative phosphatidylethanolamine-binding protein||PO:0006322||second order inflorescence branch||anatomy||PMID:12148532||||
 +
|-
 +
|100117||RCN1||Putative phosphatidylethanolamine-binding protein||PO:0007008 ||IE.02 1/2 of inflorescence emerged from flag leaf sheath stage||development||PMID:12148532||||
 +
|-
 +
|100117||RCN1||Putative phosphatidylethanolamine-binding protein||PO:0007041||inflorescence emergence stage||development||PMID:12148532||||
 +
|-
 +
|100117||RCN1||Putative phosphatidylethanolamine-binding protein||PO:0007130||sporophyte reproductive stage||development||PMID:12148532||||
 +
|-
 +
|100117||RCN1||Putative phosphatidylethanolamine-binding protein||PO:0009046||flower||anatomy||PMID:12148532||||
 +
|-
 +
|100118||RCN2||Putative phosphatidylethanolamine-binding protein||PO:0000003||whole plant||anatomy||PMID:12148532||||
 +
|-
 +
|100118||RCN2||Putative phosphatidylethanolamine-binding protein||PO:0001083||inflorescence development stage||development||PMID:12148532||||
 +
|-
 +
|100118||RCN2||Putative phosphatidylethanolamine-binding protein||PO:0006321||primary inflorescence branch||anatomy||PMID:12148532||||
 +
|-
 +
|100118||RCN2||Putative phosphatidylethanolamine-binding protein||PO:0006322||second order inflorescence branch||anatomy||PMID:12148532||||
 +
|-
 +
|100118||RCN2||Putative phosphatidylethanolamine-binding protein||PO:0007008 ||IE.02 1/2 of inflorescence emerged from flag leaf sheath stage||development||PMID:12148532||||
 +
|-
 +
|100118||RCN2||Putative phosphatidylethanolamine-binding protein||PO:0007041||inflorescence emergence stage||development||PMID:12148532||||
 +
|-
 +
|100118||RCN2||Putative phosphatidylethanolamine-binding protein||PO:0009046||flower||anatomy||PMID:12148532||||
 +
|-
 +
|80028||REH1||rice EIR1-like||PO:0000003||whole plant||anatomy||PMID:16085936||||
 +
|-
 +
|80028||REH1||rice EIR1-like||PO:0000042||shoot-borne root||anatomy||PMID:16085936||||
 +
|-
 +
|80028||REH1||rice EIR1-like||PO:0005001||basal axillary shoot system||anatomy||PMID:16085936||||
 +
|-
 +
|80028||REH1||rice EIR1-like||PO:0007520 ||root development stage||development||PMID:16085936||||
 +
|-
 +
|80028||REH1||rice EIR1-like||PO:0025025||root system||anatomy||PMID:16085936||||
 +
|-
 +
|80028||REH1||rice EIR1-like||PO:0025480||shoot-borne root primordium||anatomy||PMID:16085936||||
 +
|-
 +
|60839||SBE3||STARCH BRANCHING ENZYME 3||PO:0000003||whole plant||anatomy||PMID:8360192||||
 +
|-
 +
|60842||SD1||SEMIDWARF 1||PO:0000003||whole plant||anatomy||PMID:11961544||||
 +
|-
 +
|60842||SD1||SEMIDWARF 1||PO:0006341||primary shoot system||anatomy||PMID:11961544||||
 +
|-
 +
|60842||SD1||SEMIDWARF 1||PO:0009001||fruit||anatomy||PMID:11961544||||
 +
|-
 +
|60842||SD1||SEMIDWARF 1||PO:0020142||stem internode||anatomy||PMID:11961544||||
 +
|-
 +
|60864||SE5||PHOTOSENSITIVITY 5||PO:0000003||whole plant||anatomy||PMID:10849355||||
 +
|-
 +
|60864||SE5||PHOTOSENSITIVITY 5||PO:0006341||primary shoot system||anatomy||PMID:10849355||||
 +
|-
 +
|60864||SE5||PHOTOSENSITIVITY 5||PO:0007016 ||whole plant flowering stage||development||PMID:10849355||||
 +
|-
 +
|60864||SE5||PHOTOSENSITIVITY 5||PO:0009025||vascular leaf||anatomy||PMID:10849355||||
 +
|-
 +
|60864||SE5||PHOTOSENSITIVITY 5||PO:0009047||stem||anatomy||PMID:10849355||||
 +
|-
 +
|61191||SGR||stay green||PO:0001054||4 leaf senescence stage||development||PMID:17513504||||
 +
|-
 +
|61191||SGR||stay green||PO:0009025||vascular leaf||anatomy||PMID:17513504||||
 +
|-
 +
|60880||SHL2||SHOOTLESS 2||PO:0001081||F mature embryo stage||development||PMID:10095070||||
 +
|-
 +
|60880||SHL2||SHOOTLESS 2||PO:0006362||embryo shoot apical meristem||anatomy||PMID:10095070||||
 +
|-
 +
|60880||SHL2||SHOOTLESS 2||PO:0007131||seedling development stage||development||PMID:10095070||||
 +
|-
 +
|60880||SHL2||SHOOTLESS 2||PO:0007631||plant embryo stage||development||PMID:10095070||||
 +
|-
 +
|60880||SHL2||SHOOTLESS 2||PO:0009025||vascular leaf||anatomy||PMID:10095070||||
 +
|-
 +
|60880||SHL2||SHOOTLESS 2||PO:0020036||epiblast||anatomy||PMID:10095070||||
 +
|-
 +
|60880||SHL2||SHOOTLESS 2||PO:0025286||embryo coleoptile||anatomy||PMID:10095070||||
 +
|-
 +
|60882||SHL4||SHOOTLESS 4||PO:0000003||whole plant||anatomy||PMID:10409508||||
 +
|-
 +
|60882||SHL4||SHOOTLESS 4||PO:0007057||0 seed germination stage||development||PMID:10409508||||
 +
|-
 +
|60882||SHL4||SHOOTLESS 4||PO:0009006||shoot system||anatomy||PMID:10409508||||
 +
|-
 +
|60882||SHL4||SHOOTLESS 4||PO:0020031||radicle||anatomy||PMID:10409508||||
 +
|-
 +
|60882||SHL4||SHOOTLESS 4||PO:0020033||coleoptile||anatomy||PMID:10409508||||
 +
|-
 +
|60882||SHL4||SHOOTLESS 4||PO:0020036||epiblast||anatomy||PMID:10409508||||
 +
|-
 +
|60882||SHL4||SHOOTLESS 4||PO:0020110||scutellum||anatomy||PMID:10409508||||
 +
|-
 +
|60882||SHL4||SHOOTLESS 4||PO:0020148||shoot apical meristem||anatomy||PMID:10409508||||
 +
|-
 +
|60883||SHO1||SHOOT ORGANIZATION 1||PO:0001050 ||leaf development stage||development||GR_gene:1477||||
 +
|-
 +
|60883||SHO1||SHOOT ORGANIZATION 1||PO:0020148||shoot apical meristem||anatomy||GR_gene:1477||||
 +
|-
 +
|60936||SL1||STAMENLESS 1||PO:0000003||whole plant||anatomy||GR_gene:6472||||
 +
|-
 +
|60936||SL1||STAMENLESS 1||PO:0009029||stamen||anatomy||GR_gene:6472||||
 +
|-
 +
|60936||SL1||STAMENLESS 1||PO:0009030||carpel||anatomy||GR_gene:6472||||
 +
|-
 +
|60897||SLR||SLENDER RICE||PO:0000003||whole plant||anatomy||PMID:11340177||||
 +
|-
 +
|60897||SLR||SLENDER RICE||PO:0005005||shoot internode||anatomy||PMID:11340177||||
 +
|-
 +
|60897||SLR||SLENDER RICE||PO:0009002||plant cell||anatomy||PMID:11340177||||
 +
|-
 +
|60897||SLR||SLENDER RICE||PO:0020104||leaf sheath||anatomy||PMID:11340177||||
 +
|-
 +
|60897||SLR||SLENDER RICE||PO:0025025||root system||anatomy||PMID:11340177||||
 +
|-
 +
|80036||SNB||SUPERNUMERARY BRACT GENE||PO:0000003||whole plant||anatomy||PMID:17144896||||
 +
|-
 +
|80036||SNB||SUPERNUMERARY BRACT GENE||PO:0001083||inflorescence development stage||development||PMID:17144896||||
 +
|-
 +
|80036||SNB||SUPERNUMERARY BRACT GENE||PO:0009055||bract||anatomy||PMID:17144896||||
 +
|-
 +
|60900||SP1||SHORT PANICLE 1||PO:0001083||inflorescence development stage||development||GR_gene:1712||||
 +
|-
 +
|60900||SP1||SHORT PANICLE 1||PO:0006321||primary inflorescence branch||anatomy||GR_gene:1712||||
 +
|-
 +
|60900||SP1||SHORT PANICLE 1||PO:0006322||second order inflorescence branch||anatomy||GR_gene:1712||||
 +
|-
 +
|60900||SP1||SHORT PANICLE 1||PO:0009049||inflorescence||anatomy||GR_gene:1712||||
 +
|-
 +
|60900||SP1||SHORT PANICLE 1||PO:0009051||spikelet||anatomy||GR_gene:1712||||
 +
|-
 +
|60900||SP1||SHORT PANICLE 1||PO:0020122||inflorescence axis||anatomy||GR_gene:1712||||
 +
|-
 +
|80031||SPK||seed-specific protein kinase ||PO:0000003||whole plant||anatomy||PMID:8325505||||
 +
|-
 +
|80031||SPK||seed-specific protein kinase ||PO:0001170 ||seed development stage||development||PMID:8325505||||
 +
|-
 +
|80031||SPK||seed-specific protein kinase ||PO:0025067||seed storage parenchyma||anatomy||PMID:8325505||||
 +
|-
 +
|60912||SPL11||SPOTTED LEAF 11||PO:0007073||2 formation of axillary shoot stage||development||PMID:10939258||||
 +
|-
 +
|60912||SPL11||SPOTTED LEAF 11||PO:0007123||LP.06 six leaves visible stage||development||PMID:10939258||||
 +
|-
 +
|60912||SPL11||SPOTTED LEAF 11||PO:0020039||leaf lamina||anatomy||PMID:10939258||||
 +
|-
 +
|60912||SPL11||SPOTTED LEAF 11||PO:0020139||leaf midvein||anatomy||PMID:10939258||||
 +
|-
 +
|60908||SPL7||SPOTTED LEAF 7||PO:0007041||inflorescence emergence stage||development||PMID:12032317||||
 +
|-
 +
|60908||SPL7||SPOTTED LEAF 7||PO:0009025||vascular leaf||anatomy||PMID:12032317||||
 
|-
 
|-
−
|0800010||AID1||Anther Indehiscence1||PO:0000003||PO:Name Anatomy||PO:ID growth stage||PO:Name growth stage||15247409||||
+
|80023||SPY||Spindly||PO:0009023||leaf axil||anatomy||PMID:17052323||||
 
|-
 
|-
 +
|101258||TatC||Sec-independent protein translocase subunit C||PO:0000003||whole plant||anatomy||PMID:11244106||||
 +
|-
 +
|101258||TatC||Sec-independent protein translocase subunit C||PO:0007112||1 main shoot growth stage||development||PMID:11244106||||
 +
|-
 +
|101258||TatC||Sec-independent protein translocase subunit C||PO:0007133||leaf production stage||development||PMID:11244106||||
 +
|-
 +
|101258||TatC||Sec-independent protein translocase subunit C||PO:0009047||stem||anatomy||PMID:11244106||||
 +
|-
 +
|80012||TB1||TEOSINTE BRANCHED 1||PO:0000003||whole plant||anatomy||PMID:12581309||||
 +
|-
 +
|80012||TB1||TEOSINTE BRANCHED 1||PO:0006343||axillary shoot system||anatomy||PMID:12581309||||
 +
|-
 +
|80012||TB1||TEOSINTE BRANCHED 1||PO:0007059 ||3 branch formation stage||development||PMID:12581309||||
 +
|-
 +
|20145||TDR||Tapetum Degeneration Retardation||PO:0000003||whole plant||anatomy||PMID:16896230||||
 +
|-
 +
|10807||TPC1||Two-Pore Channel||PO:0006341||primary shoot system||anatomy||PMID:15111725||||
 +
|-
 +
|80007||UDT1||undeveloped Tapetum1||PO:0006204||sporocyte||anatomy||PMID:16141453||||
 +
|-
 +
|80007||UDT1||undeveloped Tapetum1||PO:0007624||B meiosis of megaspore mother cell stage||development||PMID:16141453||||
 +
|-
 +
|80007||UDT1||undeveloped Tapetum1||PO:0020048||microspore||anatomy||PMID:16141453||||
 +
|-
 +
|80007||UDT1||undeveloped Tapetum1||PO:0025264||anther locule||anatomy||PMID:16141453||||
 +
|-
 +
|80007||UDT1||undeveloped Tapetum1||PO:0025281||pollen||anatomy||PMID:16141453||||
 +
|-
 +
|80007||UDT1||undeveloped Tapetum1||PO:0025313||tapetum||anatomy||PMID:16141453||||
 +
|-
 +
|80022||WDA1||Wax-deficient anther1||PO:0000003||whole plant||anatomy||PMID:17138699||||
 +
|-
 +
|80022||WDA1||Wax-deficient anther1||PO:0001004||anther development stage||development||PMID:17138699||||
 +
|-
 +
|80022||WDA1||Wax-deficient anther1||PO:0009066||anther||anatomy||PMID:17138699||||
 +
|-
 +
|80022||WDA1||Wax-deficient anther1||PO:0025388||epicuticular wax||anatomy||PMID:17138699||||
 +
|-
 +
|80014||YAB1||YABBY1||PO:0000003||whole plant||anatomy||PMID:15604733||||
 +
|-
 +
|80014||YAB1||YABBY1||PO:0001083||inflorescence development stage||development||PMID:15604733||||
 +
|-
 +
|80014||YAB1||YABBY1||PO:0009029||stamen||anatomy||PMID:15604733||||
 +
|-
 +
|80014||YAB1||YABBY1||PO:0009030||carpel||anatomy||PMID:15604733||||
 +
|-
 +
|101186||ZEP1||Zeaxanthin epoxidase 1||PO:0000003||whole plant||anatomy||PMID:11244106||||
 +
|-
 +
|101186||ZEP1||Zeaxanthin epoxidase 1||PO:0007057 ||1 seed germination stage||development||PMID:11244106
 +
 +
[[Category:Annotations]]

Latest revision as of 17:31, 18 August 2014

This data set was annotated as part of the Plant Phenotype Pilot Project

PO anatomy and growth stage annotations table:

GR_gene:ID Gene Symbol Gene Name PO:ID PO:Name PO:Aspect PMID: comments
0101319 APL1 ADP-glucose Pyrophosphorylase large subunit 1 PO:0009066 leaf sheath anatomy 16275672
0800010 AID1 Anther Indehiscence1 PO:0000003 whole plant anatomy 15247409
0800010 AID1 Anther Indehiscence1 PO:0005001 basal axillary shoot system anatomy 15247409
0800010 AID1 Anther Indehiscence1 PO:0009051 spikelet anatomy 15247409
0800010 AID1 Anther Indehiscence1 PO:0007073 2 formation of axillary shoot stage development 15247409
0800010 AID1 Anther Indehiscence1 PO:0007016 whole plant flowering stage development 15247409
60058 APO1 Aberrant Panicle Organization PO:0000003 whole plant anatomy 15950602
60058 APO1 Aberrant Panicle Organization PO:0000230 inflorescence meristem anatomy 15950602
60058 APO1 Aberrant Panicle Organization PO:0006321 primary inflorescence branch anatomy 15950602
60058 APO1 Aberrant Panicle Organization PO:0006322 second order inflorescence branch anatomy 15950602
60058 APO1 Aberrant Panicle Organization PO:0009025 vascular leaf anatomy 15950602
60058 APO1 Aberrant Panicle Organization PO:0009051 spikelet anatomy 15950602
60058 APO1 Aberrant Panicle Organization PO:0009081 inflorescence branch anatomy 15950602
60058 APO1 Aberrant Panicle Organization PO:0001050 leaf development stage development 15950602
60058 APO1 Aberrant Panicle Organization PO:0001083 inflorescence development stage development 15950602
60068 BC1 BRITTLE CULM 1 PO:0001051 1 leaf initiation stage development 12953108
60068 BC1 BRITTLE CULM 1 PO:0001053 3 leaf fully expanded stage development 12953108
60068 BC1 BRITTLE CULM 1 PO:0007006 IL.00 inflorescence just visible stage development 12953108
60068 BC1 BRITTLE CULM 1 PO:0007023 IE.04 inflorescence fully emerged from flag leaf sheath stage development 12953108
60068 BC1 BRITTLE CULM 1 PO:0007089 stem elongation stage development 12953108
60068 BC1 BRITTLE CULM 1 PO:0007109 SE.99 maximum stem length reached stage development 12953108
60070 BC3 BRITTLE CULM 3 PO:0009047 stem anatomy GR_gene:5651
60070 BC3 BRITTLE CULM 3 PO:0007041 inflorescence emergence stage development GR_gene:5651
60073 BC6 BRITTLE CULM 6 PO:0000003 whole plant anatomy GR_gene:5933
60073 BC6 BRITTLE CULM 6 PO:0007131 seedling development stage development GR_gene:5933
80018 BLE3 BRASSINOLIDE ENHANCED GENE 3 PO:0000003 whole plant anatomy 16808934
80018 BLE3 BRASSINOLIDE ENHANCED GENE 3 PO:0006341 primary shoot system anatomy 16808934
80018 BLE3 BRASSINOLIDE ENHANCED GENE 3 PO:0025025 root system anatomy 16808934
80018 BLE3 BRASSINOLIDE ENHANCED GENE 3 PO:0000003 whole plant anatomy 16808934
80018 BLE3 BRASSINOLIDE ENHANCED GENE 3 PO:0025073 branch anatomy 16808934
80018 BLE3 BRASSINOLIDE ENHANCED GENE 3 PO:0007520 root development stage development 16808934
101269 COIN Cold inducible PO:0000003 whole plant anatomy 17549515
101269 COIN Cold inducible PO:0009002 plant cell anatomy 17549515
20064 CPS1 ent-copalyl diphosphate synthase 1 PO:0009006 shoot system anatomy 16861806
20065 CPS2 ent-copalyl diphosphate synthase 1 PO:0009006 shoot system anatomy 16861806
20066 CPS4 ent-copalyl diphosphate synthase 1 PO:0009006 shoot system anatomy 16861806
80030 CPT1 Coleoptile Phototropism PO:0020033 coleoptile anatomy 15598797
80030 CPT1 Coleoptile Phototropism PO:0025025 root system anatomy 15598797
60184 D1 dwarf-1 PO:0005005 shoot internode anatomy PMID:12237405
60184 D1 dwarf-1 PO:0006341 primary shoot system anatomy PMID:12237405
60184 D1 dwarf-1 PO:0009001 fruit anatomy PMID:12237405
60184 D1 dwarf-1 PO:0009025 vascular leaf anatomy PMID:12237405
60184 D1 dwarf-1 PO:0009039 glume anatomy PMID:12237405
60184 D1 dwarf-1 PO:0009047 stem anatomy PMID:12237405
60184 D1 dwarf-1 PO:0009049 inflorescence anatomy PMID:12237405
60192 D10 DWARF KIKEIBANSHINRIKI PO:0000003 whole plant anatomy GR_gene:5792
60192 D10 DWARF KIKEIBANSHINRIKI PO:0005001 basal axillary shoot system anatomy GR_gene:5792
60192 D10 DWARF KIKEIBANSHINRIKI PO:0007073 2 formation of axillary shoot stage development GR_gene:5792
60192 D10 DWARF KIKEIBANSHINRIKI PO:0007130 sporophyte reproductive stage development GR_gene:5792
60192 D10 DWARF KIKEIBANSHINRIKI PO:0009006 shoot system anatomy GR_gene:5792
60192 D10 DWARF KIKEIBANSHINRIKI PO:0009049 inflorescence anatomy GR_gene:5792
60193 D11 DWARF SHINKANEAIKOKU OR NOHRIN 28 PO:0009001 fruit anatomy PMID:15705958
60193 D11 DWARF SHINKANEAIKOKU OR NOHRIN 28 PO:0009006 shoot system anatomy PMID:15705958
60193 D11 DWARF SHINKANEAIKOKU OR NOHRIN 28 PO:0025500 whole plant fruit development stage development PMID:15705958
60186 D3 DWARF BUNKETSUWAITO TILLERING PO:0000003 whole plant anatomy PMID:15659436
60186 D3 DWARF BUNKETSUWAITO TILLERING PO:0005001 basal axillary shoot system anatomy PMID:15659436
60186 D3 DWARF BUNKETSUWAITO TILLERING PO:0006341 primary shoot system anatomy PMID:15659436
60213 D35 dwarf-35 PO:0006341 primary shoot system anatomy PMID:15075394
60226 D61 DWARF 61 PO:0009006 shoot system anatomy PMID:11006334
101251 DCL1 Dicer like 1 PO:0000003 whole plant anatomy PMID:16126864
101251 DCL1 Dicer like 1 PO:0000042 shoot-borne root anatomy PMID:16126864
101251 DCL1 Dicer like 1 PO:0006341 primary shoot system anatomy PMID:16126864
101251 DCL1 Dicer like 1 PO:0007112 1 main shoot growth stage development PMID:16126864
101251 DCL1 Dicer like 1 PO:0007133 leaf production stage development PMID:16126864
101251 DCL1 Dicer like 1 PO:0007520 root development stage development PMID:16126864
101251 DCL1 Dicer like 1 PO:0009006 shoot system anatomy PMID:16126864
101251 DCL1 Dicer like 1 PO:0009025 vascular leaf anatomy PMID:16126864
60233 DL DROOPING LEAF PO:0001050 leaf development stage development PMID:14729915
60233 DL DROOPING LEAF PO:0020139 leaf midvein anatomy PMID:14729915
80029 DOS delay of the onset of senescence PO:0001054 4 leaf senescence stage development PMID:16778011
80017 DWARF BRASSINOSTEROID-DEFICIENT DWARF 1 PO:0001050 leaf development stage development PMID:12445121
80017 DWARF BRASSINOSTEROID-DEFICIENT DWARF 1 PO:0007089 stem elongation stage development PMID:12445121
80017 DWARF BRASSINOSTEROID-DEFICIENT DWARF 1 PO:0009002 plant cell anatomy PMID:12445121
80017 DWARF BRASSINOSTEROID-DEFICIENT DWARF 1 PO:0009002 plant cell anatomy PMID:12445121
80017 DWARF BRASSINOSTEROID-DEFICIENT DWARF 1 PO:0025527 shoot system development stage development PMID:12445121
80016 DWARF4 DWARF4 PO:0000003 whole plant anatomy PMID:16369540
80016 DWARF4 DWARF4 PO:0007133 leaf production stage development PMID:16369540
80016 DWARF4 DWARF4 PO:0009001 fruit anatomy PMID:16369540
80016 DWARF4 DWARF4 PO:0009006 shoot system anatomy PMID:16369540
80016 DWARF4 DWARF4 PO:0009025 vascular leaf anatomy PMID:16369540
80016 DWARF4 DWARF4 PO:0009049 inflorescence anatomy PMID:16369540
60320 EUI1 ELONGATED UPPERMOST INTERNODE 1 PO:0001083 inflorescence development stage development PMID:16399803
60320 EUI1 ELONGATED UPPERMOST INTERNODE 1 PO:0005005 shoot internode anatomy PMID:16399803
60333 FON1 FLORAL ORGAN NUMBER 1 PO:0000003 whole plant anatomy PMID:16511358
60333 FON1 FLORAL ORGAN NUMBER 1 PO:0000229 flower meristem anatomy PMID:16511358
60333 FON1 FLORAL ORGAN NUMBER 1 PO:0007600 floral organ differentiation stage development PMID:16511358
60333 FON1 FLORAL ORGAN NUMBER 1 PO:0025395 floral organ anatomy PMID:16511358
80005 FOR1 floral organ regulator 1 PO:0007600 floral organ differentiation stage development PMID:14750524
80005 FOR1 floral organ regulator 1 PO:0009051 spikelet anatomy PMID:14750524
80005 FOR1 floral organ regulator 1 PO:0025395 floral organ anatomy PMID:14750524
60339 FZP FRIZZY PANICLE PO:0007615 flower development stage development PMID:12835399
60339 FZP FRIZZY PANICLE PO:0009039 glume anatomy PMID:12835399
60339 FZP FRIZZY PANICLE PO:0025073 branch anatomy PMID:12835399
60366 GH2 GOLD HULL AND INTERNODE 2 PO:0006000 caryopsis hull anatomy PMID:16443696
60366 GH2 GOLD HULL AND INTERNODE 2 PO:0007010 whole plant fruit ripening stage development PMID:16443696
60366 GH2 GOLD HULL AND INTERNODE 2 PO:0007025 IE.00 inflorescence tip just visible above flag leaf sheath stage development PMID:16443696
60366 GH2 GOLD HULL AND INTERNODE 2 PO:0009037 lemma anatomy PMID:16443696
60366 GH2 GOLD HULL AND INTERNODE 2 PO:0009038 palea anatomy PMID:16443696
80024 GID2 GA-insensitive dwarf 2 PO:0000003 whole plant anatomy PMID:12649483
80024 GID2 GA-insensitive dwarf 2 PO:0007133 leaf production stage development PMID:12649483
80024 GID2 GA-insensitive dwarf 2 PO:0009006 shoot system anatomy PMID:12649483
80024 GID2 GA-insensitive dwarf 2 PO:0009025 vascular leaf anatomy PMID:12649483
80062 GIF1 GRAIN INCOMPLETE FILLING 1 PO:0009001 fruit anatomy PMID:18820698
80062 GIF1 GRAIN INCOMPLETE FILLING 1 PO:0025500 whole plant fruit development stage development PMID:18820698
80027 HTD1 High-Tillering Dwarf1 PO:0000003 whole plant anatomy PMID:17092317
80027 HTD1 High-Tillering Dwarf1 PO:0004709 axillary bud anatomy PMID:17092317
80027 HTD1 High-Tillering Dwarf1 PO:0006341 primary shoot system anatomy PMID:17092317
80027 HTD1 High-Tillering Dwarf1 PO:0007073 2 formation of axillary shoot stage development PMID:17092317
80027 HTD1 High-Tillering Dwarf1 PO:0009025 vascular leaf anatomy PMID:17092317
20067 KS1 Ent-kaurene synthase 1 PO:0009006 shoot system anatomy PMID:17141283
20068 KS2 Ent-kaurene synthase 2 PO:0009006 shoot system anatomy PMID:17141283
20070 KS4 Ent-kaurene synthase 4 PO:0009006 shoot system anatomy PMID:17141283
20071 KS5 Ent-kaurene synthase 5 PO:0009006 shoot system anatomy PMID:17141283
20072 KS6 Ent-kaurene synthase 6 PO:0009006 shoot system anatomy PMID:17141283
20073 KS7 Ent-kaurene synthase 7 PO:0009006 shoot system anatomy PMID:17141283
60493 LAX LAX PANICLE PO:0000003 whole plant anatomy PMID:7896104
60493 LAX LAX PANICLE PO:0001083 inflorescence development stage development PMID:7896104
101253 Log Lonely Guy PO:0000003 whole plant anatomy PMID:17287810
101253 Log Lonely Guy PO:0000229 flower meristem anatomy PMID:17287810
101253 Log Lonely Guy PO:0001083 inflorescence development stage development PMID:17287810
101253 Log Lonely Guy PO:0004010 meristematic cell anatomy PMID:17287810
101253 Log Lonely Guy PO:0009030 carpel anatomy PMID:17287810
101253 Log Lonely Guy PO:0009049 inflorescence anatomy PMID:17287810
101253 Log Lonely Guy PO:0009081 inflorescence branch anatomy PMID:17287810
101253 Log Lonely Guy PO:0020148 shoot apical meristem anatomy PMID:17287810
80009 LSI1 Low silicon rice 1 PO:0000003 whole plant anatomy PMID:16572174
80009 LSI1 Low silicon rice 1 PO:0009001 fruit anatomy PMID:16572174
80037 LSI2 Low silicon rice 2 PO:0006000 caryopsis hull anatomy PMID:17625566
80037 LSI2 Low silicon rice 2 PO:0009001 fruit anatomy PMID:17625566
80015 MADS1 MADS1 PO:0000003 whole plant anatomy PMID:16146529
80015 MADS1 MADS1 PO:0006000 caryopsis hull anatomy PMID:16146529
80015 MADS1 MADS1 PO:0007130 sporophyte reproductive stage development PMID:16146529
80015 MADS1 MADS1 PO:0009025 vascular leaf anatomy PMID:16146529
80015 MADS1 MADS1 PO:0009029 stamen anatomy PMID:16146529
80015 MADS1 MADS1 PO:0009030 carpel anatomy PMID:16146529
80041 MADS13 MADS13 PO:0000003 whole plant anatomy PMID:10528264
80041 MADS13 MADS13 PO:0001083 inflorescence development stage development PMID:10528264
80025 MADS18 MADS18 PO:0005005 shoot internode anatomy PMID:15299121
80025 MADS18 MADS18 PO:0006341 primary shoot system anatomy PMID:15299121
80025 MADS18 MADS18 PO:0007016 whole plant flowering stage development PMID:15299121
80021 MADS22 MADS22 PO:0007615 flower development stage development PMID:15682279
80021 MADS22 MADS22 PO:0009039 glume anatomy PMID:15682279
80019 MDP1 MADS-domain-containing protein 1 PO:0007045 coleoptile emergence stage development PMID:16827922
80019 MDP1 MADS-domain-containing protein 1 PO:0007520 root development stage development PMID:16827922
80019 MDP1 MADS-domain-containing protein 1 PO:0020039 leaf lamina anatomy PMID:16827922
80019 MDP1 MADS-domain-containing protein 1 PO:0020127 primary root anatomy PMID:16827922
80042 MEL1 MEIOSIS ARRESTED AT LEPTOTENE 1 PO:0007624 B meiosis of megaspore mother cell stage development PMID:17675402
80042 MEL1 MEIOSIS ARRESTED AT LEPTOTENE 1 PO:0020047 microsporocyte anatomy PMID:17675402
80008 MOC1 Monoculm 1 PO:0005001 basal axillary shoot system anatomy PMID:12687001
80008 MOC1 Monoculm 1 PO:0007073 2 formation of axillary shoot stage development PMID:12687001
61178 MSP1 MULTIPLE SPOROCYTE 1 PO:0000003 whole plant anatomy PMID:12897248
61178 MSP1 MULTIPLE SPOROCYTE 1 PO:0006204 sporocyte anatomy PMID:12897248
61178 MSP1 MULTIPLE SPOROCYTE 1 PO:0007624 B meiosis of megaspore mother cell stage development PMID:12897248
61178 MSP1 MULTIPLE SPOROCYTE 1 PO:0025313 tapetum anatomy PMID:12897248
80011 OSNOP no pollen PO:0000003 whole plant anatomy PMID:15952069
80011 OSNOP no pollen PO:0007016 whole plant flowering stage development PMID:15952069
80011 OSNOP no pollen PO:0025281 pollen anatomy PMID:15952069
100119 PAIR1 HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1 PO:0000084 plant sperm cell anatomy PMID:15031413
100119 PAIR1 HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1 PO:0007016 whole plant flowering stage development PMID:15031413
100119 PAIR1 HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1 PO:0007134 sporophyte vegetative stage development PMID:15031413
100119 PAIR1 HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1 PO:0007624 B meiosis of megaspore mother cell stage development PMID:15031413
100119 PAIR1 HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1 PO:0020094 plant egg cell anatomy PMID:15031413
100120 PAIR2 HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 2 PO:0000003 whole plant anatomy PMID:14758540
61182 PLA2 PLASTOCHRON2 PO:0000003 whole plant anatomy PMID:16461585
61182 PLA2 PLASTOCHRON2 PO:0001050 leaf development stage development PMID:16461585
61182 PLA2 PLASTOCHRON2 PO:0001051 1 leaf initiation stage development PMID:16461585
61182 PLA2 PLASTOCHRON2 PO:0005001 basal axillary shoot system anatomy PMID:16461585
61182 PLA2 PLASTOCHRON2 PO:0007112 1 main shoot growth stage development PMID:16461585
61182 PLA2 PLASTOCHRON2 PO:0007130 sporophyte reproductive stage development PMID:16461585
61182 PLA2 PLASTOCHRON2 PO:0009006 shoot system anatomy PMID:16461585
80013 PNH1 PINHEAD 1 PO:0005020 vascular bundle anatomy PMID:12000455
80013 PNH1 PINHEAD 1 PO:0009011 plant structure anatomy PMID:12000455
80013 PNH1 PINHEAD 1 PO:0009025 vascular leaf anatomy PMID:12000455
80061 PROG1 PROSTRATE GROWTH 1 PO:0000003 whole plant anatomy PMID:18820699
80061 PROG1 PROSTRATE GROWTH 1 PO:0006341 primary shoot system anatomy PMID:18820699
80061 PROG1 PROSTRATE GROWTH 1 PO:0009001 fruit anatomy PMID:18820699
101187 PSS1 pollen semi-sterile 1 PO:0005011 anther dehiscence zone anatomy PMID:17279367
101187 PSS1 pollen semi-sterile 1 PO:0020094 plant egg cell anatomy PMID:17279367
101187 PSS1 pollen semi-sterile 1 PO:0025281 pollen anatomy PMID:17279367
100117 RCN1 Putative phosphatidylethanolamine-binding protein PO:0000003 whole plant anatomy PMID:12148532
100117 RCN1 Putative phosphatidylethanolamine-binding protein PO:0006321 primary inflorescence branch anatomy PMID:12148532
100117 RCN1 Putative phosphatidylethanolamine-binding protein PO:0006322 second order inflorescence branch anatomy PMID:12148532
100117 RCN1 Putative phosphatidylethanolamine-binding protein PO:0007008 IE.02 1/2 of inflorescence emerged from flag leaf sheath stage development PMID:12148532
100117 RCN1 Putative phosphatidylethanolamine-binding protein PO:0007041 inflorescence emergence stage development PMID:12148532
100117 RCN1 Putative phosphatidylethanolamine-binding protein PO:0007130 sporophyte reproductive stage development PMID:12148532
100117 RCN1 Putative phosphatidylethanolamine-binding protein PO:0009046 flower anatomy PMID:12148532
100118 RCN2 Putative phosphatidylethanolamine-binding protein PO:0000003 whole plant anatomy PMID:12148532
100118 RCN2 Putative phosphatidylethanolamine-binding protein PO:0001083 inflorescence development stage development PMID:12148532
100118 RCN2 Putative phosphatidylethanolamine-binding protein PO:0006321 primary inflorescence branch anatomy PMID:12148532
100118 RCN2 Putative phosphatidylethanolamine-binding protein PO:0006322 second order inflorescence branch anatomy PMID:12148532
100118 RCN2 Putative phosphatidylethanolamine-binding protein PO:0007008 IE.02 1/2 of inflorescence emerged from flag leaf sheath stage development PMID:12148532
100118 RCN2 Putative phosphatidylethanolamine-binding protein PO:0007041 inflorescence emergence stage development PMID:12148532
100118 RCN2 Putative phosphatidylethanolamine-binding protein PO:0009046 flower anatomy PMID:12148532
80028 REH1 rice EIR1-like PO:0000003 whole plant anatomy PMID:16085936
80028 REH1 rice EIR1-like PO:0000042 shoot-borne root anatomy PMID:16085936
80028 REH1 rice EIR1-like PO:0005001 basal axillary shoot system anatomy PMID:16085936
80028 REH1 rice EIR1-like PO:0007520 root development stage development PMID:16085936
80028 REH1 rice EIR1-like PO:0025025 root system anatomy PMID:16085936
80028 REH1 rice EIR1-like PO:0025480 shoot-borne root primordium anatomy PMID:16085936
60839 SBE3 STARCH BRANCHING ENZYME 3 PO:0000003 whole plant anatomy PMID:8360192
60842 SD1 SEMIDWARF 1 PO:0000003 whole plant anatomy PMID:11961544
60842 SD1 SEMIDWARF 1 PO:0006341 primary shoot system anatomy PMID:11961544
60842 SD1 SEMIDWARF 1 PO:0009001 fruit anatomy PMID:11961544
60842 SD1 SEMIDWARF 1 PO:0020142 stem internode anatomy PMID:11961544
60864 SE5 PHOTOSENSITIVITY 5 PO:0000003 whole plant anatomy PMID:10849355
60864 SE5 PHOTOSENSITIVITY 5 PO:0006341 primary shoot system anatomy PMID:10849355
60864 SE5 PHOTOSENSITIVITY 5 PO:0007016 whole plant flowering stage development PMID:10849355
60864 SE5 PHOTOSENSITIVITY 5 PO:0009025 vascular leaf anatomy PMID:10849355
60864 SE5 PHOTOSENSITIVITY 5 PO:0009047 stem anatomy PMID:10849355
61191 SGR stay green PO:0001054 4 leaf senescence stage development PMID:17513504
61191 SGR stay green PO:0009025 vascular leaf anatomy PMID:17513504
60880 SHL2 SHOOTLESS 2 PO:0001081 F mature embryo stage development PMID:10095070
60880 SHL2 SHOOTLESS 2 PO:0006362 embryo shoot apical meristem anatomy PMID:10095070
60880 SHL2 SHOOTLESS 2 PO:0007131 seedling development stage development PMID:10095070
60880 SHL2 SHOOTLESS 2 PO:0007631 plant embryo stage development PMID:10095070
60880 SHL2 SHOOTLESS 2 PO:0009025 vascular leaf anatomy PMID:10095070
60880 SHL2 SHOOTLESS 2 PO:0020036 epiblast anatomy PMID:10095070
60880 SHL2 SHOOTLESS 2 PO:0025286 embryo coleoptile anatomy PMID:10095070
60882 SHL4 SHOOTLESS 4 PO:0000003 whole plant anatomy PMID:10409508
60882 SHL4 SHOOTLESS 4 PO:0007057 0 seed germination stage development PMID:10409508
60882 SHL4 SHOOTLESS 4 PO:0009006 shoot system anatomy PMID:10409508
60882 SHL4 SHOOTLESS 4 PO:0020031 radicle anatomy PMID:10409508
60882 SHL4 SHOOTLESS 4 PO:0020033 coleoptile anatomy PMID:10409508
60882 SHL4 SHOOTLESS 4 PO:0020036 epiblast anatomy PMID:10409508
60882 SHL4 SHOOTLESS 4 PO:0020110 scutellum anatomy PMID:10409508
60882 SHL4 SHOOTLESS 4 PO:0020148 shoot apical meristem anatomy PMID:10409508
60883 SHO1 SHOOT ORGANIZATION 1 PO:0001050 leaf development stage development GR_gene:1477
60883 SHO1 SHOOT ORGANIZATION 1 PO:0020148 shoot apical meristem anatomy GR_gene:1477
60936 SL1 STAMENLESS 1 PO:0000003 whole plant anatomy GR_gene:6472
60936 SL1 STAMENLESS 1 PO:0009029 stamen anatomy GR_gene:6472
60936 SL1 STAMENLESS 1 PO:0009030 carpel anatomy GR_gene:6472
60897 SLR SLENDER RICE PO:0000003 whole plant anatomy PMID:11340177
60897 SLR SLENDER RICE PO:0005005 shoot internode anatomy PMID:11340177
60897 SLR SLENDER RICE PO:0009002 plant cell anatomy PMID:11340177
60897 SLR SLENDER RICE PO:0020104 leaf sheath anatomy PMID:11340177
60897 SLR SLENDER RICE PO:0025025 root system anatomy PMID:11340177
80036 SNB SUPERNUMERARY BRACT GENE PO:0000003 whole plant anatomy PMID:17144896
80036 SNB SUPERNUMERARY BRACT GENE PO:0001083 inflorescence development stage development PMID:17144896
80036 SNB SUPERNUMERARY BRACT GENE PO:0009055 bract anatomy PMID:17144896
60900 SP1 SHORT PANICLE 1 PO:0001083 inflorescence development stage development GR_gene:1712
60900 SP1 SHORT PANICLE 1 PO:0006321 primary inflorescence branch anatomy GR_gene:1712
60900 SP1 SHORT PANICLE 1 PO:0006322 second order inflorescence branch anatomy GR_gene:1712
60900 SP1 SHORT PANICLE 1 PO:0009049 inflorescence anatomy GR_gene:1712
60900 SP1 SHORT PANICLE 1 PO:0009051 spikelet anatomy GR_gene:1712
60900 SP1 SHORT PANICLE 1 PO:0020122 inflorescence axis anatomy GR_gene:1712
80031 SPK seed-specific protein kinase PO:0000003 whole plant anatomy PMID:8325505
80031 SPK seed-specific protein kinase PO:0001170 seed development stage development PMID:8325505
80031 SPK seed-specific protein kinase PO:0025067 seed storage parenchyma anatomy PMID:8325505
60912 SPL11 SPOTTED LEAF 11 PO:0007073 2 formation of axillary shoot stage development PMID:10939258
60912 SPL11 SPOTTED LEAF 11 PO:0007123 LP.06 six leaves visible stage development PMID:10939258
60912 SPL11 SPOTTED LEAF 11 PO:0020039 leaf lamina anatomy PMID:10939258
60912 SPL11 SPOTTED LEAF 11 PO:0020139 leaf midvein anatomy PMID:10939258
60908 SPL7 SPOTTED LEAF 7 PO:0007041 inflorescence emergence stage development PMID:12032317
60908 SPL7 SPOTTED LEAF 7 PO:0009025 vascular leaf anatomy PMID:12032317
80023 SPY Spindly PO:0009023 leaf axil anatomy PMID:17052323
101258 TatC Sec-independent protein translocase subunit C PO:0000003 whole plant anatomy PMID:11244106
101258 TatC Sec-independent protein translocase subunit C PO:0007112 1 main shoot growth stage development PMID:11244106
101258 TatC Sec-independent protein translocase subunit C PO:0007133 leaf production stage development PMID:11244106
101258 TatC Sec-independent protein translocase subunit C PO:0009047 stem anatomy PMID:11244106
80012 TB1 TEOSINTE BRANCHED 1 PO:0000003 whole plant anatomy PMID:12581309
80012 TB1 TEOSINTE BRANCHED 1 PO:0006343 axillary shoot system anatomy PMID:12581309
80012 TB1 TEOSINTE BRANCHED 1 PO:0007059 3 branch formation stage development PMID:12581309
20145 TDR Tapetum Degeneration Retardation PO:0000003 whole plant anatomy PMID:16896230
10807 TPC1 Two-Pore Channel PO:0006341 primary shoot system anatomy PMID:15111725
80007 UDT1 undeveloped Tapetum1 PO:0006204 sporocyte anatomy PMID:16141453
80007 UDT1 undeveloped Tapetum1 PO:0007624 B meiosis of megaspore mother cell stage development PMID:16141453
80007 UDT1 undeveloped Tapetum1 PO:0020048 microspore anatomy PMID:16141453
80007 UDT1 undeveloped Tapetum1 PO:0025264 anther locule anatomy PMID:16141453
80007 UDT1 undeveloped Tapetum1 PO:0025281 pollen anatomy PMID:16141453
80007 UDT1 undeveloped Tapetum1 PO:0025313 tapetum anatomy PMID:16141453
80022 WDA1 Wax-deficient anther1 PO:0000003 whole plant anatomy PMID:17138699
80022 WDA1 Wax-deficient anther1 PO:0001004 anther development stage development PMID:17138699
80022 WDA1 Wax-deficient anther1 PO:0009066 anther anatomy PMID:17138699
80022 WDA1 Wax-deficient anther1 PO:0025388 epicuticular wax anatomy PMID:17138699
80014 YAB1 YABBY1 PO:0000003 whole plant anatomy PMID:15604733
80014 YAB1 YABBY1 PO:0001083 inflorescence development stage development PMID:15604733
80014 YAB1 YABBY1 PO:0009029 stamen anatomy PMID:15604733
80014 YAB1 YABBY1 PO:0009030 carpel anatomy PMID:15604733
101186 ZEP1 Zeaxanthin epoxidase 1 PO:0000003 whole plant anatomy PMID:11244106
101186 ZEP1 Zeaxanthin epoxidase 1 PO:0007057 1 seed germination stage development PMID:11244106
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