Release 21

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Timeline for Release #21

• Goal is the end of May 2014; edits will be completed by ~ mid-May 2014

To-do list for Release #21

Ontology Revision Priorities

• See discussions of goals and priorities on POC_Conf._Call_8-27-13

• See items in progress on Items_for_future_meetings

• Complete old user requests/SF tracker items- Ongoing process....

Website Updates to Drupal

• Link to new home page: http://plantontology.org/
• Dev version: http://dev.plantontology.org/
• iPlant version: http://iplant.plantontology.org/

- Drupal site is still missing some important features, such as the release page

- Introduce and announce the mirrored site at iPLant

• need to update the download page and the citations pages!!

See Plant_Ontology_Web_Site_Update:_2012 for more details of proposed revisions

• Items on the tracker:

PO:IDs in definitions working as links

Browser Update:

- What is the status of the update to AmiGO 2.0?

- move files to live tag, update /trunk/ontology/OBO_format/Readme.txt

- file naming and which variations of the file to create for each release - check with cjm

- update translations synonyms- send to Ale and YY

For the next release:

Continue revisions and adding new terms for wood ontology

Most terms are in the PAE branch or for GO.

Can continue to add annotations as we go along, as well.

Potato Annotations

LC has been in contact with the group who published the potato genome paper and they are interested in collaborating with us to assign ontology terms to the annotations.

From Dr. Richard Finker (Wageningen, The Netherlands):

"We are also interested to use trait ontologies to assist in candidate gene selection within regions of interest, I'm eager to discuss with you on the efforts of cross linking ontologies to biological relevant entities. e.g. a metabolite content trait to its e.g. chebi ontology ID, form which we could obtain info about the pathway."

This will go in the next release, do they have expression data- RNA Seq?

Wood Annotations

TreeGenes and Fagaceae Genomics Web