Difference between revisions of "The cROP (Common Reference Ontologies for Plants) Initiative"

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The vision of the cROP initiative is to develop a reference set of ontologies for all plants, by analogy with, and in collaboration with, the [http://obofoundry.org OBO] (Open Biological and Biomedical Ontologies) Foundry.
 
The vision of the cROP initiative is to develop a reference set of ontologies for all plants, by analogy with, and in collaboration with, the [http://obofoundry.org OBO] (Open Biological and Biomedical Ontologies) Foundry.
  
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Draft cROP website is how [http://crop.cgrb.oregonstate.edu/ here].  
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Draft cROP website is now [http://crop.cgrb.oregonstate.edu/ here].  
  
 
For details of PRO-PO-GO (cROP) workshop in Buffalo, May 15-16, 2013 see [http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting here].
 
For details of PRO-PO-GO (cROP) workshop in Buffalo, May 15-16, 2013 see [http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting here].

Revision as of 20:12, 9 April 2013

The vision of the cROP initiative is to develop a reference set of ontologies for all plants, by analogy with, and in collaboration with, the OBO (Open Biological and Biomedical Ontologies) Foundry.

Draft cROP website is now here.

For details of PRO-PO-GO (cROP) workshop in Buffalo, May 15-16, 2013 see here.

The first proposed set of ontologies to be developed within the cROP Initiative is as follows:

  1. PO*: Plant Ontology
  2. GO: Gene Ontology
  3. PRO: Protein Ontology
  4. TO*: Plant Trait Ontology
  5. EO*: Environment Ontology (plant treatments) browse at Gramene
  6. ENVO: Ontology of environmental features and habitats
  7. PATO: Phenotype Quality Ontology
  8. Taxonomy: USDA-GRIN / NCBI / New?
  9. GAZ: An Ontologically-Informed Gazetteer (geographical locations)
  10. Plant IDO*: Plant Infectious Disease Ontology [1]
  11. Plant Diseases*: List of plant diseases
  12. CHEBI: dictionary of molecular entities
  13. PCO: Population and Community ontology

For ontologies labeled *, the Planteome group may adopt their development.

CROP.jpg

The PRO-PO-GO Meeting

A meeting on plant ontology coordination with the Gene and Protein ontologies will be held in Buffalo on May 15-16, 2013. Further details are here.

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