Difference between revisions of "Release 19"

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See: [[Items_for_future_meetings]]
 
See: [[Items_for_future_meetings]]
 
=Plant Ontology Web Site and Browser Update:=
 
* need to update the download page and the [http://plantontology-dev.cgrb.oregonstate.edu/docs/otherdocs/citingpoc.html citations] pages!!
 
 
 
Please see [[Plant_Ontology_Web_Site_Update:_2012]] for more details
 
 
*Items on the [http://palea.cgrb.oregonstate.edu/trac/report/1 tracker]:
 
 
PO:IDs in definitions working as links, fixes to web page headers
 
 
 
*Browser update- what is the status of this?
 

Revision as of 06:35, 17 December 2012

See also:


Goals and Timeline for the next Release #19

Timeline for Release: Goal is mid-December 2012

To-do list for Release #19

- Update the webpages- which ones are top priority? See below

- move files to live tag, update /trunk/ontology/OBO_format/Readme.txt

- file naming and which variations of the file to create for each release - check with cjm

- update translations synonyms- send to Ale and YY

Priorities:

Continue major revision of PSDS

Focus on the revisions on:

PO:0007033 : whole plant development stage

> PO:0028002 : sporophyte development stage

>> PO:0007130 : sporophyte reproductive stage [46604]: (Some still have the numbers preceding them, others don't)

>>> PO:0007047 : 3 inflorescence detectable stage [29131]

>>>PO:0007016 : 4 flowering [28057]

>>>PO:0007042 : 5 fruit formation [31009]

>>>PO:0007010 : 6 ripening [37642]


>> PO:0007134 : sporophyte vegetative stage [60370]: (Some still have the numbers preceding them, others don't)

>>>PO:0007057 : 0 seed germination stage [29568]

>>>PO:0007112 : 1 main shoot growth stage [47411]

>>>PO:0007131 : seedling development stage [26673]


PO:0009012 : plant structure development stage:

> PO:0007615 : flower development stage [48067]

>PO:0001083 : inflorescence development stage [48067]


PO:0025339 : plant organ development stage [46618]

>PO:0001050 : leaf development stage [45968]

>PO:0007520 : root development stage [25208]


PO:0025338 : collective plant structure development stage [49645]

>PO:0007615 : flower development stage [48067]

New or expanded Annotation Files

  • rice
  • grape


Annotation Guidelines

Comments from PJ from previous meeting (9-27-11): Ask MS if she can write up a small blurb on how she created the Maize annotations. Maize probe ids => gene ids methods and cut-offs, a guide for other collaborators and a page for the info. Maybe co-author it with SR

-This will also be helpful when applying for new grants

-it would be helpful to have a detailed guide on our wiki for collaborators

Complete old user requests/SF tracker items

Ongoing process....

See: Items_for_future_meetings