Difference between revisions of "The cROP (Common Reference Ontologies for Plants) Initiative"
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# GO: [http://www.geneontology.org Gene Ontology] | # GO: [http://www.geneontology.org Gene Ontology] | ||
# PRO: [http://pir.georgetown.edu/pro/pro.shtml Protein Ontology] | # PRO: [http://pir.georgetown.edu/pro/pro.shtml Protein Ontology] | ||
| − | # TO*: | + | # TO*: [http://palea.cgrb.oregonstate.edu/trait_ontology/cgi-bin/trait_amigo/go.cgi Plant Trait Ontology] |
# EO*: Environment Ontology (plant treatments) [http://www.gramene.org/db/ontology/search?id=EO:0007359 browse at Gramene] | # EO*: Environment Ontology (plant treatments) [http://www.gramene.org/db/ontology/search?id=EO:0007359 browse at Gramene] | ||
# ENVO: [http://www.obofoundry.org/cgi-bin/detail.cgi?id=envo Ontology of environmental features and habitats] | # ENVO: [http://www.obofoundry.org/cgi-bin/detail.cgi?id=envo Ontology of environmental features and habitats] | ||
Revision as of 17:13, 2 October 2012
First proposed set of ontologies to be developed within the cROP Initiative
- PO*: Plant Ontology
- GO: Gene Ontology
- PRO: Protein Ontology
- TO*: Plant Trait Ontology
- EO*: Environment Ontology (plant treatments) browse at Gramene
- ENVO: Ontology of environmental features and habitats
- PATO: Phenotype Quality Ontology
- Taxonomy: USDA-GRIN / NCBI / New?
- GAZ: An Ontologically-Informed Gazetteer (geographical locations)
- Plant IDO*: Plant Infectious Disease Ontology [1]
- Plant Diseases*: List of plant diseases
- CHEBI: dictionary of molecular entities
- PCO: population and community ontology
For ontologies labeled *, the 'Planteome' group may adopt their development.
