Difference between revisions of "POC Conf. Call 10-2-12"

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(Created page with 'POC meeting, Webex Conference Call; Date: Tuesday Oct 2nd, 2012 10am PDT/1pm EDT In attendance: POC members: Absent: Collaborators: none Any changes or corrections (additi…')
 
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Back to [[POC Meetings Minutes]]
 
Back to [[POC Meetings Minutes]]
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=Upcoming meetings and Presentations 2012-2013:=
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==[http://phenotypercn.org/ Phenotype RCN meeting], Oct 26-29th 2012==
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Asilomar, CA
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LC is going and has been working with LM to compile EQ statemnts to describe ~100 rice mutants.  These are going to be compiled with similar statements from maize, Arabidopsis, Soybean, SGN- tomato, and  Medicago.
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The project (headed by EH) be combining the mutants with similar E and Q and looking at the genes and if they are othologs.
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==[http://www.intlpag.org/ PAG 2013], San Diego, CA; January 12th - 16th, 2013==
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* Date and Time: Saturday, January 12, 2013: 08:00 AM - 10:10 AM, Royal Palm Salon 5-6
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We will be running a workshop focusing on:
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[https://pag.confex.com/pag/xxi/webprogram/Session1596.html Applications of Ontologies for Plant and Animal Genomics]
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Three speakers so far: Eva, Reinhard Simon and Elizabeth Arnaud. 
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* PJ present the Ref Plant Ontology Vision? 
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* Would like to invite someone from Textpresso and AgriGO 
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from 9/4- ''PJ: Suggestions- someone from GO in Berkeley, e.g. Nigam Shaw'' 
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* Can we offer something to entice the speakers, in addition to the $100 discount on registration offered by the conference?
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* Need to submit list of speakers by November 1, 2012. 
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from 9/4- ''PJ will check with DW about Gramene involvement''
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Deadline for computer demo- Nov 1st
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''I would imagine a SIA demo would be appropriate. - JP''
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==Biocuration 2013 conference, Cambridge, 7-10th April 2013==
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submission deadline for papers and abstracts for posters is 30th November.  Papers will be published by DATABASE.
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possible venue for CROP white paper?
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==PRO-PO-GO meeting, ~May 2013==
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Location: Buffalo, NY
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Dates TBD: '' Will probably be a Wednesday and Thursday around the 2nd or 3rd week of May.  Should avoid Memorial Day Weekend (May 24-27th).''
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Goals:
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# To educate members of the PRO, PO and GO communities concerning developments in each of the three ontologies, with a view to enhanced coordination
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# To identify potentially fruitful applications which such enhanced coordination might bring 
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# To enhance the Protein Ontology treatment of plant-related proteins
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# To address coordination issues between the GO and PO, for example as concerns treatment of development stages
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# To further those aspects of CROP which relate to PRO and GO [this is assuming that PRO is included as one of the external ontologies in CROP]
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Tentative participant list:
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PO Consortium members: Pankaj Jaiswal and Laurel Cooper (OSU), Dennis Stevenson (NYBG), Barry Smith (Buffalo), others?
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GO Consortium members: Jane Lomax (EBI), Judith Blake (JAX), Alex Diehl (Buffalo) who else?
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PRO Consortium members: Cathy Wu, Alan Ruttenberg (Buffalo)

Revision as of 17:20, 28 September 2012

POC meeting, Webex Conference Call; Date: Tuesday Oct 2nd, 2012 10am PDT/1pm EDT

In attendance:

POC members:

Absent:


Collaborators: none


Any changes or corrections (additions/deletions, etc) needed in the minutes from the POC_Conf._Call_9-25-12?

Back to POC Meetings Minutes


Upcoming meetings and Presentations 2012-2013:

Phenotype RCN meeting, Oct 26-29th 2012

Asilomar, CA

LC is going and has been working with LM to compile EQ statemnts to describe ~100 rice mutants. These are going to be compiled with similar statements from maize, Arabidopsis, Soybean, SGN- tomato, and Medicago.

The project (headed by EH) be combining the mutants with similar E and Q and looking at the genes and if they are othologs.

PAG 2013, San Diego, CA; January 12th - 16th, 2013

  • Date and Time: Saturday, January 12, 2013: 08:00 AM - 10:10 AM, Royal Palm Salon 5-6

We will be running a workshop focusing on:

Applications of Ontologies for Plant and Animal Genomics

Three speakers so far: Eva, Reinhard Simon and Elizabeth Arnaud.

  • PJ present the Ref Plant Ontology Vision?
  • Would like to invite someone from Textpresso and AgriGO

from 9/4- PJ: Suggestions- someone from GO in Berkeley, e.g. Nigam Shaw

  • Can we offer something to entice the speakers, in addition to the $100 discount on registration offered by the conference?
  • Need to submit list of speakers by November 1, 2012.

from 9/4- PJ will check with DW about Gramene involvement

Deadline for computer demo- Nov 1st

I would imagine a SIA demo would be appropriate. - JP


Biocuration 2013 conference, Cambridge, 7-10th April 2013

submission deadline for papers and abstracts for posters is 30th November. Papers will be published by DATABASE.

possible venue for CROP white paper?

PRO-PO-GO meeting, ~May 2013

Location: Buffalo, NY Dates TBD: Will probably be a Wednesday and Thursday around the 2nd or 3rd week of May. Should avoid Memorial Day Weekend (May 24-27th).

Goals:

  1. To educate members of the PRO, PO and GO communities concerning developments in each of the three ontologies, with a view to enhanced coordination
  2. To identify potentially fruitful applications which such enhanced coordination might bring
  3. To enhance the Protein Ontology treatment of plant-related proteins
  4. To address coordination issues between the GO and PO, for example as concerns treatment of development stages
  5. To further those aspects of CROP which relate to PRO and GO [this is assuming that PRO is included as one of the external ontologies in CROP]


Tentative participant list:

PO Consortium members: Pankaj Jaiswal and Laurel Cooper (OSU), Dennis Stevenson (NYBG), Barry Smith (Buffalo), others?

GO Consortium members: Jane Lomax (EBI), Judith Blake (JAX), Alex Diehl (Buffalo) who else?

PRO Consortium members: Cathy Wu, Alan Ruttenberg (Buffalo)

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