Difference between revisions of "CRIBI- Grape Genomics"
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| − | + | [http://www.cribi.unipd.it/index.php/Genomics CRIBI] | |
Interdepartmental Biotechnology Centre of the University of Padua | Interdepartmental Biotechnology Centre of the University of Padua | ||
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abbreviation:GG | abbreviation:GG | ||
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database: Grape Genome Database | database: Grape Genome Database | ||
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description: Grape Genome Database | description: Grape Genome Database | ||
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object: Locus identifier | object: Locus identifier | ||
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example_id: GG:VIT_10s0116g00060 | example_id: GG:VIT_10s0116g00060 | ||
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local_id_syntax: | local_id_syntax: | ||
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generic_url: http://genomes.cribi.unipd.it | generic_url: http://genomes.cribi.unipd.it | ||
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url_example: !url_syntax: | url_example: !url_syntax: | ||
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| + | Re:email discussion of annotation files (10-10-11) | ||
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| + | example: VIT_10s0003g05820- has different set of PO annotations on their site. | ||
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| + | Annotations in file "gg_anatomy.assoc2" to fruit valve which are derived by IEA to TAIR:Locus:2198621. This is actually a TAIR "accession #" | ||
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| + | see link to: [http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G20140 AT1G20140] | ||
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http://genomes.cribi.unipd.it/cgi-bin/pqs2/report.pl?gene_name=VIT_10s0116g00060&release=v1 | http://genomes.cribi.unipd.it/cgi-bin/pqs2/report.pl?gene_name=VIT_10s0116g00060&release=v1 | ||
| − | Link for Grape Genome Site: | + | Link for Grape Genome Site: [http://genomes.cribi.unipd.it/cgi-bin/pqs2/query.pl?release=v1 Grape Genome] |
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| + | Link on the Grape Genome site to query site [http://genomes.cribi.unipd.it/cgi-bin/pqs2/query.pl?release=v1#cribi_po_str:0 Ontologies] | ||
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| − | + | [[Category:Collaborations]] | |
Latest revision as of 16:19, 30 April 2012
Interdepartmental Biotechnology Centre of the University of Padua
10-4-11:
abbreviation:GG
database: Grape Genome Database
description: Grape Genome Database
object: Locus identifier
example_id: GG:VIT_10s0116g00060
local_id_syntax:
generic_url: http://genomes.cribi.unipd.it
url_syntax: http://genomes.cribi.unipd.it/cgi-bin/pqs2/report.pl?gene_name=[example_id]&release=v1
url_example: http://genomes.cribi.unipd.it/cgi-bin/pqs2/report.pl?gene_name=VIT_10s0116g00060&release=v1
url_example: !url_syntax:
Re:email discussion of annotation files (10-10-11)
example: VIT_10s0003g05820- has different set of PO annotations on their site.
Annotations in file "gg_anatomy.assoc2" to fruit valve which are derived by IEA to TAIR:Locus:2198621. This is actually a TAIR "accession #"
see link to: AT1G20140
http://genomes.cribi.unipd.it/cgi-bin/pqs2/report.pl?gene_name=VIT_10s0116g00060&release=v1
Link for Grape Genome Site: Grape Genome
Link on the Grape Genome site to query site Ontologies
