Difference between revisions of "Plant Trait Ontology"
| Line 56: | Line 56: | ||
==Tuber terms:== | ==Tuber terms:== | ||
| + | PO:0025048 : subterranean tuber epidermis | ||
| + | |||
| + | PO:0025038 : subterranean tuber storage parenchyma | ||
| + | |||
| + | PO:0025042 : subterranean tuber axillary vegetative bud | ||
Revision as of 07:28, 17 April 2012
This page will be a place to keep track of the work on developing the Plant Trait Ontology
New:
Call for papers: Knowledge Engineering and Ontology Development
Crop Plant Trait Ontology paper
Also: Ontologies and semantic technologies for agricultural knowledge in practice
Related Wiki Pages and Links:
Details about the plans for the Crop_Ontology_Workshop_at_OSU,_2012
Work on the wood traits: Goal_3._Wood_qualities_and_phenotypes
TO Tracker on SourceForge
Trait Ontology on Bioportal: TO
Links to Collaborator Sites:
GCP Phenotype and Trait Ontology
Ontology Issues:
root term: plant trait (TO:0000387)
need to fix definition of to include cellular components and biochemical traits etc current def'n: A measurable or observable characteristic of a plant anatomical entity (PO:0000003) and/or a plant structure development stage (PO:0009012).
proposed def'n: A measurable or observable characteristic of a plant anatomical entity (PO:0000003), a plant structure development stage (PO:0009012) or a cellular component thereof. Comment: This includes physiological, molecular and biochemical traits as well.
current def'n: This category belongs to traits associated with changes in the anatomy or structure of the plant at organ, tissue or cellular level.
proposed def'n: A plant trait (TO:0000387) associated with a plant anatomical entity (PO:0000003) or a cellular component thereof.
problem with this currently is that it does not include whole plant traits, but has children such as plant height (is_a shoot anatomy and morphology trait)
whole plant trait
has been obsoleted, maybe we should consider bringing back?
shoot anatomy and morphology trait TO:0000077
current def'n: Traits associated with changes in the anatomy or structure of the shoot and its parts.
proposed def'n:
Tuber terms:
PO:0025048 : subterranean tuber epidermis
PO:0025038 : subterranean tuber storage parenchyma
PO:0025042 : subterranean tuber axillary vegetative bud
tuber shape
tuber size
tuber appearance
tuber mass
