Difference between revisions of "New terms and obsolete terms-April 2012 Release"

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−
Back to [[February 2012 Release Page]]
+
Back to [[April_2012_Release_Page]]
  
−
=New plant structure development stage terms=
+
=New plant anatomical entity terms=
 +
awn (PO:0025349)
 +
 
 +
palea awn (PO:0025350)
 +
 
 +
glume awn (PO:0025351)
 +
 
 +
tubercle (PO:0025352)
 +
 
 +
bud areole (PO:0025353)
 +
 
 +
cladode (PO:0025354)
 +
 
 +
corm (PO:0025355)
 +
 
 +
bulb (PO:0025356)
  
 +
pneumatophore (PO:0025357)
  
−
life of whole plant (PO:0025337)  
+
pneumatorhiza (PO:0025358)
  
−
collective plant structure development stage (PO:0025338)
+
sorus (PO:0025359)
  
−
plant organ development stage (PO:0025339)
+
coenosorus (PO:0025360)
  
−
gametophyte vegetative development stage (PO:0025340)
+
leaf tendril (PO:0025361)
  
−
gametophyte reproductive development stage (PO:0025341)
+
leaflet tendril (PO:0025362)
  
−
gametophyte dormant stage (PO:0025342)
+
leaf apex tendril (PO:0025363)
  
−
gametophyte senescent stage (PO:0025343)
+
branch tendril (PO:0025364)
  
−
gametophore reproductive whole plant development stage (PO:0025344)  
+
stem apex tendril (PO:0025365)
  
−
gametophore vegetative whole plant development stage (PO:0025345)
+
leaf rachis tendril (PO:0025366)
  
−
thallus reproductive whole plant development stage (PO:0025346)
+
prophyll tendril (PO:0025367)
  
−
thallus vegetative whole plant development stage (PO:0025347)
+
arillode (PO:0025378)
  
−
spore germination stage (PO:0025348)
+
intercellular space (PO:0025379)
  
−
trichome development stage (PO:0025368)
+
leaf mesophyll intercellular space (PO:0025380)
  
−
seed trichome development stage (PO:0025369)
+
spongy mesophyll intercellular space (PO:0025381)
  
−
seed trichome initiation stage (PO:0025370)
+
substomatal cavity (PO:0025382)
  
−
seed trichome elongation stage (PO:0025371)
+
phyllome sinus (PO:0025383)
  
−
seed trichome secondary wall biosynthesis stage (PO:0025372)
+
leaf sinus (PO:0025384)
  
−
seed trichome maturation stage (PO:0025373)
+
cutin (PO:0025385)
  
−
seed dormant stage (PO:0025374)
+
cuticular wax (PO:0025386)
  
−
plant spore stage (PO:0025375)
+
plant cuticle proper (PO:0025387)
  
−
plant spore dormant stage (PO:0025376)
+
epicuticular wax (PO:0025388)
  
−
plant embryo dormant stage (PO:0025377)
+
intercuticular wax (PO:0025389)
  
 
free ending veinlet (PO:0025390)
 
free ending veinlet (PO:0025390)
Line 62: Line 78:
 
phyllome lamina (PO:0025396)
 
phyllome lamina (PO:0025396)
  
−
=New plant anatomical entity terms=
+
palisade mesophyll intercellular space (PO:0025397)
−
intercellular space (PO:0025379)
+
 
 +
phyllome substomatal cavity (PO:0025398)
 +
 
 +
leaf substomatal cavity (PO:0025399)
 +
 
 +
phyllome adaxial meristem (PO:0025400)
 +
 
 +
leaf adaxial meristem (PO:0025401)
 +
 
 +
phyllome abaxial meristem (PO:0025402)
 +
 
 +
leaf abaxial meristem (PO:0025403)
 +
 
 +
phyllome marginal meristem (PO:0025404)
 +
 
 +
leaf marginal meristem (PO:0025405)
 +
 
 +
sieve element (PO:0025406)
 +
 
 +
plant fiber cell (PO:0025407)
 +
 
 +
primary vascular tissue (PO:0025408)
 +
 
 +
secondary vascular tissue (PO:0025409)
 +
 
 +
axial system (PO:0025410)
 +
 
 +
ray system (PO:0025411)
 +
 
 +
albuminous cell (PO:0025412)
 +
 
 +
primary vein (PO:0025413)
 +
 
 +
secondary thickening meristem (PO:0025414)
 +
 
 +
sieve cell (PO:0025415)
 +
 
 +
sieve tube (PO:0025416)
 +
 
 +
vessel (PO:0025417)
 +
 
 +
sclerid (PO:0025418)
 +
 
 +
septate fiber tracheid (PO:0025419)
 +
 
 +
septate libriform fiber cell (PO:0025420)
 +
 
 +
septate phloem fiber cell (PO:0025421)
 +
 
 +
gelatinous fiber (PO:0025422)
 +
 
 +
phyllome plate meristem: (PO:0025428)
 +
 
 +
leaf plate meristem: (PO:0025429)
 +
 
 +
phyllome anlagen: (PO:0025430)
 +
 
 +
leaf anlagen (PO:0025431)
 +
 
 +
cotyledon anlagen (PO:0025432)
 +
 
 +
root anlagen: (PO:0025433)
 +
 
 +
petiole vascular bundle (PO:0025434)
 +
 
 +
shoot axis cork cambium (PO:0025435)
 +
 
 +
root cork cambium (PO:0025436)
 +
 
 +
shoot axis vascular cambium (PO:0025437)
 +
 
 +
root vascular cambium (PO:0025438)
 +
 
 +
cambial zone (PO:0025439)
 +
 
 +
shoot axis cambial zone (PO:0025440)
 +
 
 +
root cambial zone (PO:0025441)
 +
 
 +
stem secondary thickening meristem (PO:0025442)
 +
 
 +
root secondary thickening meristem (PO:0025443)
 +
 
 +
primary xylem tracheary element (PO:0025444)
 +
 
 +
secondary xylem tracheary element (PO:0025445)
 +
 
 +
primary xylem tracheid (PO:0025446)
 +
 
 +
secondary xylem tracheid (PO:0025447)
 +
 
 +
primary xylem vessel member (PO:0025448)
 +
 
 +
secondary xylem vessel member (PO:0025449)
 +
 
 +
primary xylem vessel (PO:0025450)
 +
 
 +
secondary xylem vessel (PO:0025451)
 +
 
 +
primary phloem sieve element (PO:0025452)
 +
 
 +
secondary phloem sieve element (PO:0025453)
 +
 
 +
primary phloem sieve cell (PO:0025454)
 +
 
 +
primary phloem sieve tube element (PO:0025455)
 +
 
 +
secondary phloem sieve cell (PO:0025456)
 +
 
 +
secondary phloem sieve tube element (PO:0025457)
 +
 
 +
transfer companion cell (PO:0025458)
 +
 
 +
ordinary companion cell (PO:0025459)
 +
 
 +
intermediary companion cell (PO:0025460)
 +
 
 +
early wood tracheary element (PO:0025461)
 +
 
 +
late wood tracheary element (PO:0025462)
 +
 
 +
reaction wood (PO:0025472)
 +
 
 +
compression wood (PO:0025473)
 +
 
 +
tension wood (PO:0025474)
 +
 
 +
==Renamed terms: PAE==
 +
cuticle (PO:0000022) to plant cuticle (PO:0000022)
 +
 
 +
awn (PO:0006032) > lemma awn
 +
 
 +
spore (PO:0025017) > plant spore
 +
 
 +
inflorescence lateral meristem (PO:0009105) > inflorescence branch meristem
 +
 
 +
ear lateral meristem (PO:0009110) > ear inflorescence branch meristem
 +
 
 +
tassel lateral meristem (PO:0009107) > tassel inflorescence branch meristem
 +
 
 +
leaf vein (PO:0020138) > leaf lamina vein (plus other leaf veins)
 +
 
 +
vessel member (PO:0002003) > xylem vessel member
 +
 
 +
vessel (PO:0025417) > xylem vessel
 +
 
 +
wood parenchyma (PO:0004532) > secondary xylem parenchyma
 +
 
 +
axial wood parenchyma (PO:0004533) > ray secondary xylem parenchyma
 +
 
 +
ray wood parenchyma (PO:0004534) > axial secondary xylem parenchyma
 +
 
 +
wood parenchyma cell (PO:0004525) > secondary xylem parenchyma cell
 +
 
 +
ray wood parenchyma cell (PO:0004527) > ray secondary xylem parenchyma cell
 +
 
 +
upright wood ray parenchyma cell (PO:0004528) > upright ray secondary xylem parenchyma cell
 +
 
 +
procumbent wood ray parenchyma cell (PO:0004529) > procumbent ray secondary xylem parenchyma cell
 +
 
 +
axial wood parenchyma cell (PO:0004526) > axial secondary xylem parenchyma cell
 +
 
 +
embryo axis (PO:0019018) > plant embryo axis
 +
 
 +
cambial initial (PO:0000295) > cambial initial cell
 +
 
 +
epidermal initial (PO:0000349) > epidermal initial cell
 +
 
 +
epidermal rhizoid initial (PO:0030068) > epidermal rhizoid initial cell
 +
 
 +
fusiform initial (PO:0000079) > fusiform initial cell
 +
 
 +
gametophore bud initial (PO:0030083) > gametophore bud initial cell
 +
 
 +
non-vascular leaf initial (PO:0030087) > non-vascular leaf initial cell
 +
 
 +
protonema side branch initial (PO:0030067) > protonema side branch initial cell
 +
 
 +
protonema sub-apical initial (PO:0030086) > protonema sub-apical initial cell
 +
 
 +
protonemal side branch rhizoid initial (PO:0030077) > protonemal side branch rhizoid initial cell
 +
 
 +
ray initial (PO:0000082) > ray initial cell
  
−
leaf mesophyll intercellular space (PO:0025380)
+
stomatal initial (PO:0000062) > stomatal initial cell
  
−
spongy mesophyll intercellular space (PO:0025381)
+
=New plant structure development stage terms=
  
−
palisade mesophyll intercellular space (PO:0025397)
 
  
−
substomatal cavity (PO:0025382)
+
life of whole plant (PO:0025337)  
  
−
phyllome substomatal cavity (PO:0025398)
+
collective plant structure development stage (PO:0025338)
−
 
−
leaf substomatal cavity (PO:0025399)
 
  
 +
plant organ development stage (PO:0025339)
  
 +
gametophyte vegetative development stage (PO:0025340)
  
−
cutin (PO:0025385)
+
gametophyte reproductive development stage (PO:0025341)
  
−
cuticular wax (PO:0025386)
+
gametophyte dormant stage (PO:0025342)
  
−
plant cuticle proper (PO:0025387)
+
gametophyte senescent stage (PO:0025343)
  
−
epicuticular wax(PO:0025388)
+
gametophore reproductive whole plant development stage (PO:0025344)  
  
−
intercuticular wax (PO:0025389)
+
gametophore vegetative whole plant development stage (PO:0025345)
  
 +
thallus reproductive whole plant development stage (PO:0025346)
  
 +
thallus vegetative whole plant development stage (PO:0025347)
  
 +
trichome development stage (PO:0025368)
  
−
palea awn (PO:0025350)
+
seed trichome development stage (PO:0025369)
  
−
glume awn (PO:0025351)
+
seed trichome initiation stage (PO:0025370)
  
−
tubercle (PO:0025352)
+
seed trichome elongation stage (PO:0025371)
  
−
bud areole (PO:0025353) (maybe should be areole bud)
+
seed trichome secondary wall biosynthesis stage (PO:0025372)
  
−
cladode (PO:0025354)
+
seed trichome maturation stage (PO:0025373)
  
−
corm (PO:0025355)
+
seed dormant stage (PO:0025374)
  
−
bulb (PO:0025356)
+
plant spore stage (PO:0025375)
  
−
pneumatophore (PO:0025357)
+
plant spore dormant stage (PO:0025376)
  
−
pneumatorhiza (PO:0025358)
+
plant embryo dormant stage (PO:0025377)
  
−
sorus (PO:0025359)
+
plant tissue development stage (PO:0025423)
  
−
coenosorus (PO:0025360)
+
vascular tissue development stage (PO:0025424)
  
−
leaf tendril (PO:0025361)
+
xylem development stage (PO:0025425)
  
−
leaflet tendril (PO:0025362)
+
phloem development stage (PO:0025426)
  
−
leaf apex tendril (PO:0025363)
+
secondary xylem development stage (PO:0025427)
  
−
branch tendril (PO:0025364)
+
cell division stage of secondary xylem (PO:0025463)
  
−
stem apex tendril (PO:0025365)
+
cell expansion stage of secondary xylem (PO:0025464)
  
−
leaf rachis tendril (PO:0025366)
+
secondary cell wall formation stage of secondary xylem (PO:0025465)
  
−
prophyll tendril (PO:0025367)
+
cell death stage of secondary xylem (PO:0025466)
  
−
arillode (PO:0025378)
+
tracheary element death stage of secondary xylem (PO:0025467)
  
−
=Renamed terms=
+
secondary xylem parenchyma cell death stage of secondary xylem (PO:0025468)
−
renamed: cuticle (PO:0000022) to plant cuticle (PO:0000022)
 
  
 +
cell differentiation stage of secondary xylem (PO:0025469)
  
 +
coleorhiza emergence stage (PO:0025475)
  
 +
==Renamed terms: PSDS==
 +
Changed all the terms that had "stages" in their names to "stage" and changed "developmental" to "development" for about 10 terms.
  
 
whole plant growth stage (PO:0007033) > whole plant development stage
 
whole plant growth stage (PO:0007033) > whole plant development stage
Line 152: Line 355:
 
protonema phase (PO:0030006) > protonema whole plant development stage
 
protonema phase (PO:0030006) > protonema whole plant development stage
  
−
awn (PO:0006032) > lemma awn
+
embryo development stages (PO:0007631) > plant embryo stage
 +
 
 +
A zygotic stage (PO:0001097) > plant zygote stage
 +
 
 +
=New synonyms=
 +
This is only to highlight synonyms that are substantially different than the primary term name (e.g., cone as a synonym of strobilus) or are otherwise noteworthy.
 +
 
 +
Added 333 new synonyms from [https://sourceforge.net/tracker/?func=detail&aid=3376762&group_id=76834&atid=835555 FNA term glossary] to existing PO terms.
  
−
spore (PO:0025017) > plant spore
+
Added synonyms: lateral meristem - lateral growth meristem; shoot lateral meristem - shoot lateral growth meristem; root lateral meristem - root lateral growth meristem
  
−
Changed all the terms that had "stages" in their names to "stage" and changed "developmental" to "development" for about 10 terms
+
Added broad synonyms to 34 terms that had plant in the name, so they would show up in searches for an exact match (e.g., "embryo" as synonym of "plant embryo", "organ" as synonym of "plant organ").
  
−
=New synonyms=
+
Added "leaf venation" as related synonym of ''leaf vascular system'' (PO:0000036)
−
This is only to highlight synonyms that are substantially different than the primary term name (e.g., cone as a synonym of strobilus).
 
  
−
working on 363 synonyms from FNA
+
Added '''diaspore''' as broad synonym to ''seed'' (PO:0009010), ''fruit'' (PO:0009001), ''plant spore'' (PO:0025017),  ''corm'' (PO:0025355), ''bulb'' (PO:0025356), and ''tuber'' (PO:0004543).
  
−
=Merged terms=
+
Added "leaf margin blastozon" as exact synonym to ''leaf marginal meristem''.
  
−
plant structure development stage (PO:0007021) into plant growth and development stage (PO:0009012) -- plant structure development stage is primary name
+
Added "midrib" and "mid rib" as broad synonyms to both ''costa'' (PO:0030072) and ''midvein'' (PO:0020139)
  
−
=Obsolete terms=
+
Added colony (related), clonal colony (related), genet (broad), ramet (broad) as synonyms of ''whole plant'' (PO:0000003).
  
 +
Added "ramet" as broad synonym of ''gametophore'' (PO:0030018).
  
−
=Other Changes:=
+
Added "simple strobilus", "compound strobilus", and "strobili" as synonyms of ''strobilus'' (PO:0025083).
  
−
Changed the aspect (namespace) from plant_growth_and_development_stage to
+
Added "SAM" as synonym of ''shoot apical meristem'' (PO:0020148).
−
plant_structure_development_stage
 
  
−
Moved leaf trichome development stage (PO:0007039) to be is_a trichome development stage.
+
Got rid of old GRO synonyms on ''sporophyte dormant stage'' These synonyms were not relevant to the term, and the GRO ontology is no longer in use.
−
new def'n: A trichome development stage that has as primary participant a leaf trichome. (POC:Curators)
 
  
−
Modified def'n: seed trichome: (PO:0004511): A trichome that develops from seed coat epidermis.
+
=Merged terms=
  
−
Got rid of old GRO synonyms on sporophyte dormant stage.
+
plant structure development stage (PO:0007021) into plant growth and development stage (PO:0009012) -- plant structure development stage is primary name
  
−
Made seed is_a plant structure. Updated definition.  Removed seed_part of fruit and added develops_from ovule, has_part embryo
+
=Obsolete terms=
 +
axial cell (PO:0000081), consider fiber cell (PO:0025407), sieve element (PO:0025406), tracheary element (PO:0000290)
  
−
Added seed dormant stage has_part plant embryo dormant stage
+
xylem element (PO:0000273), consider tracheary element (PO:0000290) and xylem fiber cell (PO:0000274)

Latest revision as of 00:37, 5 April 2012

Back to April_2012_Release_Page

New plant anatomical entity terms

awn (PO:0025349)

palea awn (PO:0025350)

glume awn (PO:0025351)

tubercle (PO:0025352)

bud areole (PO:0025353)

cladode (PO:0025354)

corm (PO:0025355)

bulb (PO:0025356)

pneumatophore (PO:0025357)

pneumatorhiza (PO:0025358)

sorus (PO:0025359)

coenosorus (PO:0025360)

leaf tendril (PO:0025361)

leaflet tendril (PO:0025362)

leaf apex tendril (PO:0025363)

branch tendril (PO:0025364)

stem apex tendril (PO:0025365)

leaf rachis tendril (PO:0025366)

prophyll tendril (PO:0025367)

arillode (PO:0025378)

intercellular space (PO:0025379)

leaf mesophyll intercellular space (PO:0025380)

spongy mesophyll intercellular space (PO:0025381)

substomatal cavity (PO:0025382)

phyllome sinus (PO:0025383)

leaf sinus (PO:0025384)

cutin (PO:0025385)

cuticular wax (PO:0025386)

plant cuticle proper (PO:0025387)

epicuticular wax (PO:0025388)

intercuticular wax (PO:0025389)

free ending veinlet (PO:0025390)

lamina areole (PO:0025391)

leaf lamina areole (PO:0025392)

pappus (PO:0025393)

pappus element (PO:0025394)

floral organ (PO:0025395)

phyllome lamina (PO:0025396)

palisade mesophyll intercellular space (PO:0025397)

phyllome substomatal cavity (PO:0025398)

leaf substomatal cavity (PO:0025399)

phyllome adaxial meristem (PO:0025400)

leaf adaxial meristem (PO:0025401)

phyllome abaxial meristem (PO:0025402)

leaf abaxial meristem (PO:0025403)

phyllome marginal meristem (PO:0025404)

leaf marginal meristem (PO:0025405)

sieve element (PO:0025406)

plant fiber cell (PO:0025407)

primary vascular tissue (PO:0025408)

secondary vascular tissue (PO:0025409)

axial system (PO:0025410)

ray system (PO:0025411)

albuminous cell (PO:0025412)

primary vein (PO:0025413)

secondary thickening meristem (PO:0025414)

sieve cell (PO:0025415)

sieve tube (PO:0025416)

vessel (PO:0025417)

sclerid (PO:0025418)

septate fiber tracheid (PO:0025419)

septate libriform fiber cell (PO:0025420)

septate phloem fiber cell (PO:0025421)

gelatinous fiber (PO:0025422)

phyllome plate meristem: (PO:0025428)

leaf plate meristem: (PO:0025429)

phyllome anlagen: (PO:0025430)

leaf anlagen (PO:0025431)

cotyledon anlagen (PO:0025432)

root anlagen: (PO:0025433)

petiole vascular bundle (PO:0025434)

shoot axis cork cambium (PO:0025435)

root cork cambium (PO:0025436)

shoot axis vascular cambium (PO:0025437)

root vascular cambium (PO:0025438)

cambial zone (PO:0025439)

shoot axis cambial zone (PO:0025440)

root cambial zone (PO:0025441)

stem secondary thickening meristem (PO:0025442)

root secondary thickening meristem (PO:0025443)

primary xylem tracheary element (PO:0025444)

secondary xylem tracheary element (PO:0025445)

primary xylem tracheid (PO:0025446)

secondary xylem tracheid (PO:0025447)

primary xylem vessel member (PO:0025448)

secondary xylem vessel member (PO:0025449)

primary xylem vessel (PO:0025450)

secondary xylem vessel (PO:0025451)

primary phloem sieve element (PO:0025452)

secondary phloem sieve element (PO:0025453)

primary phloem sieve cell (PO:0025454)

primary phloem sieve tube element (PO:0025455)

secondary phloem sieve cell (PO:0025456)

secondary phloem sieve tube element (PO:0025457)

transfer companion cell (PO:0025458)

ordinary companion cell (PO:0025459)

intermediary companion cell (PO:0025460)

early wood tracheary element (PO:0025461)

late wood tracheary element (PO:0025462)

reaction wood (PO:0025472)

compression wood (PO:0025473)

tension wood (PO:0025474)

Renamed terms: PAE

cuticle (PO:0000022) to plant cuticle (PO:0000022)

awn (PO:0006032) > lemma awn

spore (PO:0025017) > plant spore

inflorescence lateral meristem (PO:0009105) > inflorescence branch meristem

ear lateral meristem (PO:0009110) > ear inflorescence branch meristem

tassel lateral meristem (PO:0009107) > tassel inflorescence branch meristem

leaf vein (PO:0020138) > leaf lamina vein (plus other leaf veins)

vessel member (PO:0002003) > xylem vessel member

vessel (PO:0025417) > xylem vessel

wood parenchyma (PO:0004532) > secondary xylem parenchyma

axial wood parenchyma (PO:0004533) > ray secondary xylem parenchyma

ray wood parenchyma (PO:0004534) > axial secondary xylem parenchyma

wood parenchyma cell (PO:0004525) > secondary xylem parenchyma cell

ray wood parenchyma cell (PO:0004527) > ray secondary xylem parenchyma cell

upright wood ray parenchyma cell (PO:0004528) > upright ray secondary xylem parenchyma cell

procumbent wood ray parenchyma cell (PO:0004529) > procumbent ray secondary xylem parenchyma cell

axial wood parenchyma cell (PO:0004526) > axial secondary xylem parenchyma cell

embryo axis (PO:0019018) > plant embryo axis

cambial initial (PO:0000295) > cambial initial cell

epidermal initial (PO:0000349) > epidermal initial cell

epidermal rhizoid initial (PO:0030068) > epidermal rhizoid initial cell

fusiform initial (PO:0000079) > fusiform initial cell

gametophore bud initial (PO:0030083) > gametophore bud initial cell

non-vascular leaf initial (PO:0030087) > non-vascular leaf initial cell

protonema side branch initial (PO:0030067) > protonema side branch initial cell

protonema sub-apical initial (PO:0030086) > protonema sub-apical initial cell

protonemal side branch rhizoid initial (PO:0030077) > protonemal side branch rhizoid initial cell

ray initial (PO:0000082) > ray initial cell

stomatal initial (PO:0000062) > stomatal initial cell

New plant structure development stage terms

life of whole plant (PO:0025337)

collective plant structure development stage (PO:0025338)

plant organ development stage (PO:0025339)

gametophyte vegetative development stage (PO:0025340)

gametophyte reproductive development stage (PO:0025341)

gametophyte dormant stage (PO:0025342)

gametophyte senescent stage (PO:0025343)

gametophore reproductive whole plant development stage (PO:0025344)

gametophore vegetative whole plant development stage (PO:0025345)

thallus reproductive whole plant development stage (PO:0025346)

thallus vegetative whole plant development stage (PO:0025347)

trichome development stage (PO:0025368)

seed trichome development stage (PO:0025369)

seed trichome initiation stage (PO:0025370)

seed trichome elongation stage (PO:0025371)

seed trichome secondary wall biosynthesis stage (PO:0025372)

seed trichome maturation stage (PO:0025373)

seed dormant stage (PO:0025374)

plant spore stage (PO:0025375)

plant spore dormant stage (PO:0025376)

plant embryo dormant stage (PO:0025377)

plant tissue development stage (PO:0025423)

vascular tissue development stage (PO:0025424)

xylem development stage (PO:0025425)

phloem development stage (PO:0025426)

secondary xylem development stage (PO:0025427)

cell division stage of secondary xylem (PO:0025463)

cell expansion stage of secondary xylem (PO:0025464)

secondary cell wall formation stage of secondary xylem (PO:0025465)

cell death stage of secondary xylem (PO:0025466)

tracheary element death stage of secondary xylem (PO:0025467)

secondary xylem parenchyma cell death stage of secondary xylem (PO:0025468)

cell differentiation stage of secondary xylem (PO:0025469)

coleorhiza emergence stage (PO:0025475)

Renamed terms: PSDS

Changed all the terms that had "stages" in their names to "stage" and changed "developmental" to "development" for about 10 terms.

whole plant growth stage (PO:0007033) > whole plant development stage

gametophyte phase (PO:0028003) > gamethophyte development stage

sporophyte phase (PO:0028002) > sporophyte development stage

A vegetative growth (PO:0007134) > sporophyte vegetative development stage

B reproductive growth (PO:0007130) > sporophyte reproductive development stage

C senescence (PO:0007017) > sporophyte senscent stage

D dormancy (PO:0007132) > sporophyte vegetative dormant stage

protonema phase (PO:0030006) > protonema whole plant development stage

embryo development stages (PO:0007631) > plant embryo stage

A zygotic stage (PO:0001097) > plant zygote stage

New synonyms

This is only to highlight synonyms that are substantially different than the primary term name (e.g., cone as a synonym of strobilus) or are otherwise noteworthy.

Added 333 new synonyms from FNA term glossary to existing PO terms.

Added synonyms: lateral meristem - lateral growth meristem; shoot lateral meristem - shoot lateral growth meristem; root lateral meristem - root lateral growth meristem

Added broad synonyms to 34 terms that had plant in the name, so they would show up in searches for an exact match (e.g., "embryo" as synonym of "plant embryo", "organ" as synonym of "plant organ").

Added "leaf venation" as related synonym of leaf vascular system (PO:0000036)

Added diaspore as broad synonym to seed (PO:0009010), fruit (PO:0009001), plant spore (PO:0025017), corm (PO:0025355), bulb (PO:0025356), and tuber (PO:0004543).

Added "leaf margin blastozon" as exact synonym to leaf marginal meristem.

Added "midrib" and "mid rib" as broad synonyms to both costa (PO:0030072) and midvein (PO:0020139)

Added colony (related), clonal colony (related), genet (broad), ramet (broad) as synonyms of whole plant (PO:0000003).

Added "ramet" as broad synonym of gametophore (PO:0030018).

Added "simple strobilus", "compound strobilus", and "strobili" as synonyms of strobilus (PO:0025083).

Added "SAM" as synonym of shoot apical meristem (PO:0020148).

Got rid of old GRO synonyms on sporophyte dormant stage These synonyms were not relevant to the term, and the GRO ontology is no longer in use.

Merged terms

plant structure development stage (PO:0007021) into plant growth and development stage (PO:0009012) -- plant structure development stage is primary name

Obsolete terms

axial cell (PO:0000081), consider fiber cell (PO:0025407), sieve element (PO:0025406), tracheary element (PO:0000290)

xylem element (PO:0000273), consider tracheary element (PO:0000290) and xylem fiber cell (PO:0000274)

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