Difference between revisions of "Physco growth conditions mapped to EO"
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| − | '''Mappings to the EO:''' | + | '''Mappings to the [http://www.gramene.org/plant_ontology/ontology_browse.html#eo EO]:''' |
leaflet time series (different time points after detaching the leaflet) – no EO mapping. Leaflet in this case means non-vascular leaf. | leaflet time series (different time points after detaching the leaflet) – no EO mapping. Leaflet in this case means non-vascular leaf. | ||
Revision as of 01:07, 9 November 2011
List from MH (08/25/2011, by email)
We did: - germinating spores PO:0025017 - protonema PO:0030003, here we have the protonema in liquid culture (minmal medium and full medium) and on agar (solid) - gametophores (early stage) PO:0030018 - gametophores (later stage, gametangia visible) PO:0030018, here we also have data for a strain collected here in Germany from Freiburg Reute (I hope this will find a place in the PO) - non-vascular leaf PO:0025075 - protoplasts PO:0000006
At the moment all the experiments are assigned to a specific plant anatomy but they could also be added at the corresponding growth stage. As for the protonema I'm not sure if the different growth conditions can somehow be included. If not we would prefer to add the protonema in minimal medium liquid culture. In the files are listed all the genes that are expressed, with an normalized microarray signal higher than RPS21 (where we know from other evidences that it is expressed). We did this as we don't have confirmation by RealTime PCR for all the microarrays.
Here follows the list of stress treatments that we have done so far:
- leaflet time series (different time points after detaching the leaflet) - sun light - strong light - dark (2 and 3 weeks) - dehydration - rehydration - UV light - Abscisic acid - botrytis infection
Please contact me again if the format isn't as you expected or if you have any questions.
Best, Manuel
Mappings to the EO:
leaflet time series (different time points after detaching the leaflet) – no EO mapping. Leaflet in this case means non-vascular leaf.
sun light - EO:0007193 day light intensity
strong light - EO:0007075 high light intensity regimen
LC: I would suggest reversing these two as we now have additional info about the actual light intensities
sun light (up to 1000µmol)- EO:0007075 high light intensity regimen
strong light (800µmol) - EO:0007193 day light intensity
dark (2 and 3 weeks) - EO:0007270 continuous dark (no light) regimen
dehydration - EO:0007404 drought environment or EO:0007383 watering regimen
rehydration - EO:0007383 watering regimen
UV light - EO:0007222 UV light regimen (has subtypes for UV A, B, and C)
abscisic acid - EO:0007105 abscisic acid regimen
Botrytis infection - EO:0007233 fungi (should request new subtype for Boytrytis)
