Difference between revisions of "POC Outreach Events"

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This explains the development of a semantic web application for annotation curation. This web application makes use of PO data via a newly created web service and includes an initial data set built from PO GAF (.assoc) files for ''Oryza sativa''.  
 
This explains the development of a semantic web application for annotation curation. This web application makes use of PO data via a newly created web service and includes an initial data set built from PO GAF (.assoc) files for ''Oryza sativa''.  
  
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12th Genomic Standards Consortium Meeting (GSC 12), Max Planck Institute for Marine Microbiology, Bremen, September 28-29, 2011
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[http://gensc.org/gc_wiki/index.php/GSC_12 GSC 12]
  
  

Revision as of 22:25, 4 November 2011

Workshops, Presentations, Posters etc

Year 2012

PAG 2012

PAG 2012 Ontology workshop: Saturday January 14th from 10:20am-12:30pm

Use of Ontologies for Organizing Plant and Animal Genomics Data

Year 2011

RW will present a poster entitled "Using the Plant Ontology to improve the onteroperability of genomic and phenomic data sets". (link to abstract: Media:PO_abstract_PGB_CSHL2011.pdf


Two posters related to the Plant Ontology were presented.

LC presented the poster: Expanding the Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa.

Put link to abstract pdf

JP presented a poster: Put in title, link to abstract pdf

This explains the development of a semantic web application for annotation curation. This web application makes use of PO data via a newly created web service and includes an initial data set built from PO GAF (.assoc) files for Oryza sativa.


12th Genomic Standards Consortium Meeting (GSC 12), Max Planck Institute for Marine Microbiology, Bremen, September 28-29, 2011 GSC 12




  • ASPB Plant Biology meeting 2011,Minneapolis, Minn. Aug 6th-10th, 2011

PO and Gramene hosted a Data Curation Workshop

LC presented a PO poster and we took part in an Plant Biology 2011 Outreach Booth


  • International Botanical Congress (IBC2011), July 23rd – 30th 2011

Symposium hosted: Bio-Ontologies for the Plant Sciences under the Genetics, Genomics and Bioinformatics theme.

Please see the IBC 2011 Bio-Ontologies Symposium wiki page for more details.

Press release about the PO at IBC 2011: Media:IBC_2011_Congress_News_Thursday_28_July_WEB.pdf‎

POC presented talks:

Pankaj Jaiswal, Oregon State University, Ontologies for Plant Biology - IBC 2011

Dennis Stevenson, Genomics of Seed Plants and Ontologies.

Ramona Walls, The New York Botanical Garden, The Plant Ontology: an updated tool for all plant biologists - IBC 2011. Link to PDF of presentation: Media:Walls_PO_presentation_IBC11.pdf


  • International Conference on Biomedical Ontologies IBCO 2011 July 26-30, 2011

LC co-organized the session on "From Fins to Limbs to Leaves: Facilitating Anatomy Ontology Interoperability" and presented a flash talk "The Plant Ontology: Development of a Reference Ontology for all Plants"

LC also presented the PO in the OBO Foundry session as part of the application for OBO Foundry Membership (link to this?)


*Plant Working Group Meeting of the Phenotype Ontology RCN,Google Campus in Boulder, CO; June 1-3, 2011

All four (Plants, Arthropoda, Vertebrates and Bioinformatics) Working Group sessions ran concurrently to maximize the benefits of emerging results, group experiences and collective synergy.


*Semantic Web Workshop, June 6-7, 2011, Santa Fe, NM.

The Plant Ontology was represented at the 2011 Semantic Web Workshop. Hosted by Damian Gessler and the iPlant Collaborative, this two-day workshop focused on biological applications for semantic web services. JP and JE attended.


* Presentation to Physcomitrella Collaborators May 2011 Plant Ontology Webinar- May 2011 release


  • Phenotype RCN Meeting Durham, NC, February 25-27, 2011

The Plant Ontology attended the inaugural meeting of the newly-funded [Phenotype Ontology RCN] at the National Evolutionary Synthesis Center in Durham, NC.

  • Plant and Animal Genome XIX Conference PAG 2011, San Diego, CA. January 15-19, 2011

LC, RW, JP and DWS presented a poster and a computer demo. LC took part in the Plant Phenotypes workshop and panel discussion We also hosted a PO Collaborators workshop [1] on Sunday, Jan 16th, 2011.

Year 2010

Justin Preece will present the poster: A Semantic Wiki for Genotype/Phenotype Annotation in Plant Species" File:NETTAB 2010 poster proposal.pdf

  • Seminar, Department of Botany and Plant Pathology, Oregon State University

Laurel presented a seminar: Bridging Plant Anatomy and Genomics in the Digital Era: Recent Advances at The Plant Ontology File:Cooper BPP final (LC 10-14-10).pdf

  • Seminar, New York Botanical Garden. October 6, 2010. Ramona Walls presented a seminar 'Plant Ontology: A tool for structural, developmental and molecular plant biologists'

Laurel Cooper and Pankaj Jaiswal attended. Laurel presented a poster:The Plant Ontology: A Database for Plant Genomics.

Cooper, L., Elser, J., Walls, R., Stevenson, Dennis W., Smith, B., Mungall, C. J., Gandolfo, M. A., and Jaiswal, P. (2010). The Plant Ontology: A Database for Plant Genomics. American Society of Plant Biologists, Quebec, Montreal, Canada


We also organized a Plant Biology 2010 Outreach Booth: Plant Genome Resources Outreach Booth.

A workshop to demonstrate the Phenote Annotation Tool was held at the ASPB Plant Biology Meeting in Montreal, Quebec, Canada.

You can find a link to the workshop page at: Phenote Workshop

  • Botany 2010, Providence, RI. Jul. 31 - Aug. 4, 2010. Dennis Stevenson, Alejandra Gandolfo, and Ramona Walls attended.

Ramona Walls gave a presentation for the Developmental and Structural Section Abstract-BSA2010 File:Presentation-BSA2010.pdf

Walls, R., Cooper, L., Elser, J., Stevenson Dennis W., Smith, B., Mungall, C. J., Gandolfo, M. A., and Jaiswal, P. (2010). The Plant Ontology: a tool for structural, developmental, and molecular plant biologists. Providence, RI.


Laurel Cooper and Ramona Walls attended and presented a poster and a one page write-up that was presented as a 'flash update talk'

File:PO Poster BioOntologies2010.pdf

File:PO FlashTalk BioOntologies2010.pdf

File:Walls Cooper BioOntologies29.pdf

Walls, R., Cooper, L., Elser, J., Dennis W. Stevenson, Mungall, C. J., Gandolfo, M. A., and Jaiswal, P. (2010). The Plant Ontology: A Common Reference Ontology for Plants. Boston, MA.


Laurel Cooper and Ramona Walls attended and Laurel presented a talk "Introduction to the Plant Ontology™"

Laurel Cooper and Justin Elser Poster and Computer Demonstration

Elser, J., Cooper, L., and Jaiswal, P. (2010). Plant Ontology: Databases And Applications. San Diego, CA.

Year 2009

  • GCP Ontology Workshop Rome, Italy, April 20-22, 2009
    • Chih-Wei Tung, Gave a talk on "Plant and Trait Ontology"

Year 2008

Year 2007

  • AGRONOMICS workshop " Ontologies, Standards and Best Practices", Gent, Belgium, May 21-23
  • ITMI Israel, April 16-20, 2007
    • Shuly Avraham, poster

Year 2006

Year 2005

  • The 16th International Conference on Arabidopsis Research, Madison, WI, June 18, 2005
  • Frontiers in Plant Biology, MO, April 2005 Poster

Year 2004

Year 2002

  • PAG X Bioinformatics: Database
    • Leszek Vincent: The POC and Plant ontologies (poster)
    • Leszek Vincent: The POC and Plant ontologies - silk purpose from a maize ear (workshop: ontology)
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