Difference between revisions of "IBC 2011 Bio-Ontologies Symposium"

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=Schedule of speakers=
 
=Schedule of speakers=
  
(Date and times TBA)
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Thursday, July 28, 2011
  
Pankaj Jaiswal, Oregon State University, [[Ontologies for Plant Biology - IBC 2011]]
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13:30PM - 15:30PM, Melbourne time
  
Ramona Walls, The New York Botanical Garden, [[The Plant Ontology: an updated tool for all plant biologists - IBC 2011]]
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Introduction to the symoposium (2 minutes or less), Ramona Walls, The New York Botanical Garden
  
Angelica Cibrian or Dennis Stevenson, Unraveling Darwin’s “abominable mystery”: using phylogenomics to identify proteins of importance in plant evolution - IBC 2011
 
  
Gavin Kennedy, The University of Queensland [[PODD: An Ontology Driven Architecture for Extensible Phenomics Data Management - IBC 2011]]
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1. Pankaj Jaiswal, Oregon State University, [[Ontologies for Plant Biology - IBC 2011]] - This will be an introductory talk on general use of ontologies, GO, genomics, etc.
  
Rudy Appels, Center for Comparative Genomics, Murdoch University, [[Investigating trait ontologies to facilitate integrating phenotype and genome sequence level information in wheat]]
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2. Dennis Stevenson, Final title TBA. Genomics of seed plants. [[Unraveling Darwin’s “abominable mystery”: using phylogenomics to identify proteins of importance in plant evolution - IBC 2011]]
  
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3. Ramona Walls, The New York Botanical Garden, [[The Plant Ontology: an updated tool for all plant biologists - IBC 2011]]
  
Notes:
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Link to PDF of presentation: [[Media:Walls_PO_presentation_IBC11.pdf]]
  
Pankaj will give the introductory talk on general use of ontologies, GO, genomics, etc, and Ramona will present the talk on the Plant Ontology. Abstracts have been submitted.
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4. Rudy Appels, Center for Comparative Genomics, Murdoch University, [[Investigating trait ontologies to facilitate integrating phenotype and genome sequence level information in wheat]]
  
No additional abstracts were submitted for our proposal, and Angelica does not think she will be able to attend because of lack of funds.  
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Link to PDF of presentation: [[Media:Appels_wheat_ontology_presentation_IBC11.pdf]]
  
Dennis will speak in place of Angelica. PJ invited two other speakers. Gavin Kennedy will talk about the ontology application in large scale phenomics projects. Still waiting for abstract from Rudi Appels, who will speak on crop genomics and phenomics.
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5. Gavin Kennedy, The University of Queensland [[PODD: An Ontology Driven Architecture for Extensible Phenomics Data Management - IBC 2011]]
  
We received permission to use the 6th time slot for a discussion session. PJ will lead the discussion.
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Link to PDF of presentation: [[Media:Kennedy_PODD_presentation_IBC11.pdf]]
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6. Scott Schuette, Department of Plant Biology, Southern Illinois University, Aaron Corley Department of Plant Biology, Southern Illinois University, Daniel Lang, Plant Biotechnology, University of Freiburg, and Matt Geisler, Department of Plant Biology, Southern Illinois University [[Predicted Protein-Protein Interactions in the Moss Physcomitrella patens: A New Bioinformatic Resource]]

Latest revision as of 13:05, 12 August 2011

International Botanical Congress (IBC2011), July 23rd – 30th 2011

The Plant Ontology will host a symosium on Bio-Ontologies for the Plant Sciences under the Genetics, Genomics and Bioinformatics theme.

Schedule of speakers

Thursday, July 28, 2011

13:30PM - 15:30PM, Melbourne time

Introduction to the symoposium (2 minutes or less), Ramona Walls, The New York Botanical Garden


1. Pankaj Jaiswal, Oregon State University, Ontologies for Plant Biology - IBC 2011 - This will be an introductory talk on general use of ontologies, GO, genomics, etc.

2. Dennis Stevenson, Final title TBA. Genomics of seed plants. Unraveling Darwin’s “abominable mystery”: using phylogenomics to identify proteins of importance in plant evolution - IBC 2011

3. Ramona Walls, The New York Botanical Garden, The Plant Ontology: an updated tool for all plant biologists - IBC 2011

Link to PDF of presentation: Media:Walls_PO_presentation_IBC11.pdf

4. Rudy Appels, Center for Comparative Genomics, Murdoch University, Investigating trait ontologies to facilitate integrating phenotype and genome sequence level information in wheat

Link to PDF of presentation: Media:Appels_wheat_ontology_presentation_IBC11.pdf

5. Gavin Kennedy, The University of Queensland PODD: An Ontology Driven Architecture for Extensible Phenomics Data Management - IBC 2011

Link to PDF of presentation: Media:Kennedy_PODD_presentation_IBC11.pdf

6. Scott Schuette, Department of Plant Biology, Southern Illinois University, Aaron Corley Department of Plant Biology, Southern Illinois University, Daniel Lang, Plant Biotechnology, University of Freiburg, and Matt Geisler, Department of Plant Biology, Southern Illinois University Predicted Protein-Protein Interactions in the Moss Physcomitrella patens: A New Bioinformatic Resource