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Return to [[PAG_2011_Collaborators_Workshop]] ==Invited People/Groups:== Already registered for PAG: * [http://www.gramene.org/plant_ontology/ Gramene] See: [http://intl-pag.org/19/19-gramene.html Gramene workshop at PAG] * [http://www.plexdb.org/index.php Plex DB] Roger P. Wise (sent through po-announce/dev list?) * Blake Meyers (meyers@dbi.udel.edu) see [http://intl-pag.org/19/19-iaic.html International Arabidopsis Informatics Consortium (IAIC) Workshop] * Physcomitrella group: [http://plantco.de/ Stefan Rensing], University of Freiburg, Germany and Daniel Lang, see: [http://www.cosmoss.org/ Cosmoss], the ''Physcomitrella patens'' resource site. see: [http://intl-pag.org/19/19-lower.html Non-seed plant workshop] * [http://www.rosaceae.org/ Genome Database for Roseae] (GDR), Univ of Washington see [http://intl-pag.org/19/19-fruits.html Fruit and Nut workshop] (lead by Doreen Main WSU), Nahla Bassil, USDA-ARS Corvallis * [http://qifa.ncpgr.cn/ Qifa Zhang] Rice Gene Expression Atlas paper qifazh@mail.hzau.edu.cn. * Brian Smith-White (smtwhite@ncbi.nlm.nih.gov) NCBI [http://intl-pag.org/19/19-ncbi.html NCBI Workshop] [http://intlpag.org/17/17-ncbi.html 2009] * [http://msbarker.com/res.htm Michael Barker], see:[http://intl-pag.org/19/19-speciation.html Speciation Genomics Workshop] (msbarker@biodiversity.ubc.ca) * TAIR, Eva Huala, Kate Dreher (PMN), (Tanya Beradini?) email: curator@arabidopsis.org *GrainGenes (curator@graingenes.org); David Matthews:(matthews@greengenes.cit.cornell.edu); Victoria Carollo (vcarollo@pw.usda.gov) * [http://solgenomics.net/tools/onto/index.pl Solanaceae Genome network (SGN)]; Lukas Mueller (but not Naama Menda); see [http://intl-pag.org/19/19-solan.html Solanaceae Workshop] * Trish Whetzel and [http://bioportal.bioontology.org/ BioPortal] * [http://fgp.huck.psu.edu/tribedb/index.pl PlantTribes] to: PI: Claude dePamphilis (Penn State) cwd3@psu.edu * [http://robust.genome.com/ RoBust: Root and Bulb Genomics Database] [http://www.horticulture.wisc.edu/PhilippSimon Phillipp Simon] * Richard Bruskiewich,[http://beta.irri.org/index.php/IRRI-Directory/Internationally-Recruited-Staff/Richard-Bruskiewich.html Bruskiewich] IRRI International Rice Research Institute (r.bruskiewich@cgiar.org) Other Folks from IRRI (Pankaj sent invite 12/14): * Ruaraidh Sackville-Hamilton (mailto: R.Hamilton@cgiar.org ), * Ken McNally (Kenneth McNally (mailto: K.McNally@cgiar.org) * Richard Bruskiewich (mailto: r.bruskiewich@irri.org) * Mau ("Mauleon, Ramil (IRRI)" <R.MAULEON@cgiar.org <mailto: R.MAULEON@cgiar.org>>) * Chengzhi Liang ( mailto: C.Liang@cgiar.org) * [http://intl-pag.org/19/19-bioinformatics.html Boinformatics Workshop] Dr. Alexander Souvorov, NCBI/NLM/NIH (souvorov@ncbi.nlm.nih.gov) "Annotation of Glycine max and Zea mays genomes" -John B. Hays, Oregon Sate University (USA) (haysj@science.oregonstate.edu) "Evolutionarily conserved guardians of the plant genome: DNA mismatch repair and DNA-damage responses" - [http://www.personal.psu.edu/jpd18/blogs/about.html Joshua Der] jpd18@psu.edu * [http://www.rothamsted.bbsrc.ac.uk/bab/ Chris Rawlings] (RRes-Roth) <chris.rawlings@bbsrc.ac.uk> * Generation Challenge Program, CIMMYT, Mexico: Rosemary Shrestha, Elizabeth Arnaud? see: [http://intl-pag.org/19/19-cp.html GCP workshop] * BAR: Nicholas Provart * OryzaBase: to: Yukiko Yamazaki (through mialing list po-dev/announce) * [http://diglib1.cecs.missouri.edu/peopledetail.php?ppid=1 Chi-Ren Shyu] (shyuc@missouri.edu), plant phenotypes workshop organizer * [http://abrc.osu.edu/ ABRC] abrc@arabidopsis.org [http://www.biosci.ohio-state.edu/pcmb/osu_pcmb/faculty_sites/Erich/index.html Erich Grotewold]: grotewold.1@osu.edu Jelena Brkljacic (Assistant Director) * Takeshi Itoh <taitoh@affrc.go.jp> * [http://beta.irri.org/projects15/en/consortium-c4rice/502-profilerfurbank Robert Furbank, IRRI] Robert.Furbank@csiro.au * Physcomitrella group: [https://www.cosmoss.org/physcome_project/wiki/Moss_Ontology MO-PO Mappings] -[http://plantco.de/ Stefan Rensing], University of Freiburg, Germany and Daniel Lang, see: [http://www.cosmoss.org/ Cosmoss], the ''Physcomitrella patens'' resource site. see: [http://intl-pag.org/19/19-lower.html Non-seed plant workshop] * [http://www.rosaceae.org/ Genome Database for Roseae] (GDR), Univ of Washington -see [http://intl-pag.org/19/19-fruits.html Fruit and Nut workshop] -Doreen Main (dorrie@wsu.edu) WSU * Nahla Bassil (nahla.bassil@ars.usda.gov), USDA-ARS Corvallis * Cecelia Arighi (arighi@dbi.udel.edu) [http://pir.georgetown.edu/pro/ Protein Ontology] * James Schnable, [http://epmb.berkeley.edu/persPage/dispPP.php?I=1387] * [http://www.nig.ac.jp/section/kurata/kurata-e.html Nori Kurata] see [http://pcp.oxfordjournals.org/content/early/2010/11/09/pcp.pcq165.abstract Rice Atlas paper preprint- Plant and Cell Physiology], nkurata@lab.nig.ac.jp ==Confirmed Reg'ns:== * '''Plant Ontology:''' Laurel, Ramona, Justin Preece, (Dennis, Pankaj) '''Gramene:''' *Palitha, *Genevieve DeClerck, (gad14@cornell.edu) *A S Karthikeyan (ak747@cornell.edu) * Michelle Watt, CSIRO Plant Industry, Australia ( michelle.watt@csiro.au) [http://intl-pag.org/19/19-root.html Root Genomics Workshop] * Ryohei Terauchi, Iwate Biotechnology Research Center (Japan) (terauchi@ibrc.or.jp), "Large-scale EMS mutant screen and Next-Gen Sequencing: Rapid gene isolation in rice" [http://intl-pag.org/19/19-mut-screening.html Mutation Screening workshop] * Rex Nelson- [http://soybase.org/ SoyBase] '''TAIR, PMC, ABRC etc''' * Eva Huala (huala@acoma.stanford.edu), [http://phenotypercn.org/ Phenotype Ontology Research Coordination Network (RCN)] TAIR/PMC: * Kate Dreher (kadreher@stanford.edu), [www.plantcyc.org[, [www. arabidopsis.org] ABRC * Jelena Brkljacic, (brkljacic.1@osu.edu), The Ohio State University, [http://abrc.osu.edu ABRC] * Anne Sturbaum, USDA-ARS, Soft Wheat Quality Lab, Wooster, Ohio '''Grape Genomics''': [http://intl-pag.org/19/19-grape.html International Grape Genome Project Workshop] * Grant Cramer, University of Nevada, Reno (cramer@unr.edu) * Anne-Francoise Adam-Blondon; INRA (adam@evry.inra.fr) * Delphine Steinbach, (delphine.steinbach@versailles.inra.fr), http://urgi.versailles.inra.fr * Rex Nelson [http://soybase.org/ SoyBase] * Brian Smith-White, (smtwhite@ncbi.nlm.nih.gov) * '''Nicholas Provart''' [http://bar.utoronto.ca/ BAR] Speaker* * Yukiko Yamazaki (yyamazak@lab.nig.ac.jp), National Institute of Genetics, OryzaBase [http://rapdb.dna.affrc.go.jp/ Natl. Inst. Agrobiol. Sci, Japan] * Takeshi itoh (taitoh@affrc.go.jp) [http://rapdb.dna.affrc.go.jp/] * Ching-chia Yang (chia@affrc.go.jp) * Tsuyoshi Tanaka (tstanaka@affrc.go.jp), Natl. Inst. Agrobiol. Sci. '''Also coming, but not Reg'd:''' * Claude dePamphilis [http://cwd.huck.psu.edu/ Claude dePamphilis], Penn State University Speaker* [http://cwd.huck.psu.edu/ Claude dePamphilis], Penn State University (also attending PAG: Josh Der) [http://floralgenome.org/tribe.php Floral Genome Project] * Mary Schaeffer, Maize GDB Speaker* * Stefan Rensing, Speaker* * Richard Bruskiewich,[http://beta.irri.org/index.php/IRRI-Directory/Internationally-Recruited-Staff/Richard-Bruskiewich.html Bruskiewich] IRRI International Rice Research Institute (r.bruskiewich@cgiar.org) * Mau (Mauleon), Ramil (IRRI) <R.MAULEON@cgiar.org <mailto: R.MAULEON@cgiar.org>>) * Ruaraidh Sackville-Hamilton (mailto: R.Hamilton@cgiar.org) * Ken McNally (Kenneth McNally (mailto: K.McNally@cgiar.org), Will probably do presentation, Speaker* ==Others:== * Genevestigator: contact? (support@genevestigator.com) [https://www.genevestigator.com/gv/doc/ontologies.jsp Ontologies] * VirtualPlant who, use their "contact us" form? [http://virtualplant.bio.nyu.edu/cgi-bin/vpweb2/ Virtual plant] * [http://www.geneontology.org/ Gene Ontology] * Shoshi Kikuchi (skikuchi@nias.affrc.go.jp), National Institute of Agrobiological Sciences, Japan * Helen Parkinson- Array Express EBI * Nottingham Arabidopsis [http://arabidopsis.info/cgi-bin/ontology/nasc_po/go.cgi?search_constraint=terms&action=replace_tree&session_id=8730b1287179734 NASC Ontology page] * TraitNet: Coordinators Farshid Ahrestani (fa2260@columbia.edu) and Dan Bunker (dbunker@njit.edu) * BRENDA to:project leader Prof. Dr. Dietmar Schomburg * UniProt "contact us" page ? Rachel Huntley, someone doing plant annotations from SwissProt * Cesare Gessler, ETH Zurich??

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