Difference between revisions of "Links to sites using the PO"
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[[PO integration in MSI standards]] | [[PO integration in MSI standards]] | ||
− | [http://arabidopsis.info/cgi-bin/ontology/nasc_po/go.cgi?search_constraint=terms&action=replace_tree&session_id=8730b1287179734 NASC Ontology page] | + | [http://arabidopsis.info/cgi-bin/ontology/nasc_po/go.cgi?search_constraint=terms&action=replace_tree&session_id=8730b1287179734 NASC Ontology page]- link to ontology browser is not functional |
[http://www.cs.utexas.edu/~miranker/studentWeb/OntobrowserHomePage.html OntoBrowser] | [http://www.cs.utexas.edu/~miranker/studentWeb/OntobrowserHomePage.html OntoBrowser] |
Revision as of 14:55, 28 August 2017
A to F
AgBase- only has annotations to GO
ARTADE2DB- link not working?
Biolod.org example page: non-secretory trichome see also: plant structure - link not working?
BRENDA- mostly uses BTO, but old version of PO, TO and EO are on it
Compositae Genomics Project: Morphdb
cosmoss- No PO on their site
G to L
Gene Ontology- No PO or TO?
Gramene- http://archive.gramene.org/plant_ontology/
Gramene Biomart- can filter by PO and GO
Cyverse- mirror site of planteome, otherwise not sure how it is being used otherwise
Live Plant Image Group- has links to browse PO, but not sure how it is used
M to P
MAGIC- Fu et al (2014) MAGIC: access portal to a cross-platform gene expression compendium for maize. Bioinformatics. doi: 10.1093/bioinformatics/btt739
- 'MAize Gene expressIon Compendium'. It is a web based interface for exploring and analyzing a comprehensive maize-specific cross-platform expression compendium. This compendium was constructed by collecting, homogenizing and formally annotating publicly available microarrays from Gene Expression Omnibus (GEO), and ArrayExpress.
- plant ontology annotations
MaizeGDB- cannot find any use of the PO or TO on their site...
Maize cell Genomics database- JCVI
Maize cell Genomics database- images tagged with PO ids http://maize.jcvi.org/cellgenomics/ecell.php?search=10
Manually Curated Database of Rice Proteins- tagged with TO terms
Metalife- ????
Metabolomic Repository Bordeaux MeRy- plant metabolomics platform allowing the storage and visualisation of Nuclear Magnetic Resonance (NMR) metabolic profiles from plants.
- has old version of PO
PO integration in MSI standards
NASC Ontology page- link to ontology browser is not functional
PRIDE- In query, there are a list of parameter types to choose from. If you pick PO, you get a list of terms.
The Integrated Databases of Plant Omics Data
R to Z
Solanaceae Genome network (SGN)
SuperFamily - need to address some issues here, not an "Arabidopsis Plant Ontology".
Uniprot keywords ???
Others?
not actually using the PO but should be:
Bio-Array Resource for Plant Biology (BAR)
CRIBI and the Query page