Difference between revisions of "For Next Release:"

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==Timeline for Release #22==
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=To-do list for Next Release:=
* Goal is the end of Nov 2015; edits will be completed by ~ mid-nov 2015
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* Need to update the download page and the [http://plantontology-dev.cgrb.oregonstate.edu/docs/otherdocs/citingpoc.html citations] pages
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* See [[Plant_Ontology_Web_Site_Update:_2012]] for more details of proposed revisions
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* Items on the [http://palea.cgrb.oregonstate.edu/trac/report/1 Jaiswal lab tracker]:
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** PO:IDs in definitions working as links
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==Ontology Revision Priorities==
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* See discussions of goals and priorities on [[POC_Conf._Call_8-27-13]]
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* See items in progress on [[Items_for_future_meetings]]
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* Complete old user requests/SF tracker items- Ongoing process....
  
 
==Continue revisions and adding new terms for wood ontology==
 
==Continue revisions and adding new terms for wood ontology==

Latest revision as of 13:44, 12 October 2016

Back to Main_Page#PO_Releases_and_Database_Updates


To-do list for Next Release:

  • Need to update the download page and the citations pages
    • PO:IDs in definitions working as links

Ontology Revision Priorities

  • Complete old user requests/SF tracker items- Ongoing process....

Continue revisions and adding new terms for wood ontology

Most terms are in the PAE branch or for GO.

Can continue to add annotations as we go along, as well.

Potato Annotations

LC has been in contact with the group who published the potato genome paper and they are interested in collaborating with us to assign ontology terms to the annotations.

From Dr. Richard Finker (Wageningen, The Netherlands):

"We are also interested to use trait ontologies to assist in candidate gene selection within regions of interest, I'm eager to discuss with you on the efforts of cross linking ontologies to biological relevant entities. e.g. a metabolite content trait to its e.g. chebi ontology ID, form which we could obtain info about the pathway."

This will go in the next release, do they have expression data- RNA Seq?

Wood Annotations

TreeGenes and Fagaceae Genomics Web

Browser Update:

- What is the status of the update to AmiGO 2.0?

- move files to live tag, update /trunk/ontology/OBO_format/Readme.txt

- file naming and which variations of the file to create for each release - check with cjm

- update translations synonyms- send to Ale and YY