Difference between revisions of "For Next Release:"

From Plant Ontology Wiki
Jump to navigationJump to search
Line 21: Line 21:
  
 
[http://dendrome.ucdavis.edu/treegenes/ TreeGenes] and [http://www.fagaceae.org/ Fagaceae Genomics Web]
 
[http://dendrome.ucdavis.edu/treegenes/ TreeGenes] and [http://www.fagaceae.org/ Fagaceae Genomics Web]
 
 
==Annotations to soybean- [http://soybase.org/ SoyBase]==
 

Revision as of 14:57, 1 October 2015

Back to Main_Page#PO_Releases_and_Database_Updates


For the next release:

Continue revisions and adding new terms for wood ontology

Most terms are in the PAE branch or for GO.

Can continue to add annotations as we go along, as well.

Potato Annotations

LC has been in contact with the group who published the potato genome paper and they are interested in collaborating with us to assign ontology terms to the annotations.

From Dr. Richard Finker (Wageningen, The Netherlands):

"We are also interested to use trait ontologies to assist in candidate gene selection within regions of interest, I'm eager to discuss with you on the efforts of cross linking ontologies to biological relevant entities. e.g. a metabolite content trait to its e.g. chebi ontology ID, form which we could obtain info about the pathway."

This will go in the next release, do they have expression data- RNA Seq?

Wood Annotations

TreeGenes and Fagaceae Genomics Web