Thursday, November 4th - Revision history

Cooperl: /* 2. Publication for TIPS and/or Plant Physiology */

2010-11-01T18:34:19Z

2. Publication for TIPS and/or Plant Physiology

Cooperl: /* 3. PAG Workshop planning */

2010-11-01T18:33:00Z

3. PAG Workshop planning

Rwalls: /* -deal with open SF trackers */

2010-11-01T15:48:39Z

-deal with open SF trackers

Rwalls: /* -terms with out is_a parents */

2010-11-01T14:56:36Z

-terms with out is_a parents

Rwalls: /* -terms with out is_a parents */

2010-11-01T14:30:34Z

-terms with out is_a parents

Rwalls: /* -deal with open SF trackers */

2010-11-01T14:27:59Z

-deal with open SF trackers

Rwalls at 13:58, 1 November 2010

2010-11-01T13:58:37Z

Rwalls: Created page with 'Back to ==Thursday, Nov 4th== Ramona and Lol work on: ===1. Ontology Goals: Prepare items for Friday meeting so things can be discussed efficiently=== ====-revise upper le…'

2010-11-01T13:57:28Z

Created page with 'Back to ==Thursday, Nov 4th== Ramona and Lol work on: ===1. Ontology Goals: Prepare items for Friday meeting so things can be discussed efficiently=== ====-revise upper le…'

New page

Back to

==Thursday, Nov 4th==

Ramona and Lol work on:

===1. Ontology Goals: Prepare items for Friday meeting so things can be discussed efficiently===

====-revise upper level structure of PGDSO====

Ramona and Lol will prepare suggestions for the following goals (from POC meeting on 10/13/2010) for discussion on Friday. See details on agenda for [[Friday, November 5th]].

-Finalize definition and placement of [https://sourceforge.net/tracker/index.php?func=detail&aid=3030027&group_id=76834&atid=835555 gametophytic phase and sporophytic phase]

-Rework definition of [https://sourceforge.net/tracker/?func=detail&aid=3081030&group_id=76834&atid=835555 'plant growth and developmental stage(s)'] so it is appropriate for all plants

-Reorganize the entire upper level structure of the PGDSO, so we can incorporate all plants

-add new plant structure development stages such as gametophytic and sporophytic structures, categories for non-seed plants (thallus development, capsule development)?

-deal with old Source Forge item: [http://sourceforge.net/tracker/index.php?func=detail&aid=2812238&group_id=76834&atid=835555 tuber growth and development stages]

====-deal with open SF trackers====
Ramona and Lol will prioritize these items and prepare suggested definitions for meeting on Friday.

'''From PSO:'''

(LP) [[Old SF tracker items, fall 2010]] Can deal with these at a phone meeting

(Mixed priority) [[New SF tracker items, fall 2010]]. HP items from this list are: embryo, primordium, vegetative shoot system, egg cell, sperm cell

-(LP) [https://sourceforge.net/tracker/index.php?func=detail&aid=3030644&group_id=76834&atid=835555 Musa terms] requested by Rosemary Shrestha (July 2010) Most of these are synonyms of existing terms. Can deal with these at a phone meeting.

-(MP) Adding/modifying the [https://sourceforge.net/tracker/index.php?func=detail&aid=2899934&group_id=76834&atid=835555 root terms] submitted by Rich Zobel (Nov 2009).

-(MP) [https://sourceforge.net/tracker/?func=detail&aid=3040048&group_id=76834&atid=835555 Legume terms] submitted by Austin Mast: Taproot, Stem Hair, Prickles, Fascicle, Bristle (used in key as "Stipules spinose or bristles"; might be thought of as a quality, rather than a structure), Phyllode, Banner (as in a legume flower), Wing (as in a legume flower), Keel (as in a legume flower), Anther pore and anther slit, Locule

-(MP) Elena Kramer suggested that we add the term [https://sourceforge.net/tracker/?func=detail&aid=3080941&group_id=76834&atid=835555 spur] to the PSO and consider dealing with [https://sourceforge.net/tracker/?func=detail&aid=3080945&group_id=76834&atid=835555 common primordia] in the PGDSO.

-(MP) Paula Rudall commented that the current definition of [https://sourceforge.net/tracker/?func=detail&aid=3080937&group_id=76834&atid=835555 central cell] has a different meaning in gymnosperms.

-(MP) TraitNet requested several new terms for the PSO: [https://sourceforge.net/tracker/?func=detail&aid=3080906&group_id=76834&atid=835555 corm], [https://sourceforge.net/tracker/?func=detail&aid=3080910&group_id=76834&atid=835555 spine], [https://sourceforge.net/tracker/?func=detail&aid=3080911&group_id=76834&atid=835555 podarium], [https://sourceforge.net/tracker/?func=detail&aid=3080913&group_id=76834&atid=835555 pneumatophore], [https://sourceforge.net/tracker/?func=detail&aid=3080915&group_id=76834&atid=835555 stele], [https://sourceforge.net/tracker/?func=detail&aid=3080916&group_id=76834&atid=835555 diaspore], [https://sourceforge.net/tracker/?func=detail&aid=3080919&group_id=76834&atid=835555 cone], [https://sourceforge.net/tracker/?func=detail&aid=3080922&group_id=76834&atid=835555 sorus], and [https://sourceforge.net/tracker/?func=detail&aid=3080925&group_id=76834&atid=835555 tendril].

-(HP) [https://sourceforge.net/tracker/?func=detail&aid=2982384&group_id=76834&atid=835555 embryo]: We have a proposed definition of embryo from 7/2010. We need to finalize this and close the tracker.

-(HP) reorganization of shoot system: We started working on this during the last round of revisions (with bud, and terms like reproductive shoot system), but it still needs some tweaking. Need to discuss [https://sourceforge.net/tracker/?func=detail&aid=3071947&group_id=76834&atid=835555 vegetative shoot system].

-(HP) [https://sourceforge.net/tracker/?func=detail&aid=3030032&group_id=76834&atid=835555 egg cell] and [https://sourceforge.net/tracker/?func=detail&aid=3030033&group_id=76834&atid=835555 sperm cell]: we need to finalize the definitions for these terms, and make sure they work for all plants.

'''From PGDSO:'''

-(HP) [http://sourceforge.net/tracker/index.php?func=detail&aid=2812238&group_id=76834&atid=835555 tuber growth and development stages]: open on SF since 6/2009

-(LP) [http://sourceforge.net/tracker/?func=detail&aid=1690786&group_id=76834&atid=835555 post harvest stages]: this is an old request, but no one ever commented on it.

-(MP) [https://sourceforge.net/tracker/index.php?func=detail&aid=3035688&group_id=76834&atid=835555 terms for seed development stages]:this is a fairly new request for terms for cotton

====-terms with out is_a parents====
Ramona and Lol will prioritize these items and prepare suggested definitions for meeting on Friday.

There are still about 40 classes without parents, so we won't have time to talk about them all. Focus on terms that require new parent terms and group input

See separate pages:

[[List_of_terms_without_is_a_parents]] in numerical order

[[Categorized list of terms without parents]]

'''Suggested Priorities (RW):'''

-[http://wiki.plantontology.org:8080/index.php/Categorized_list_of_terms_without_parents#.28HP.29_Primordium primordium]

-Parentage of [http://wiki.plantontology.org:8080/index.php/Categorized_list_of_terms_without_parents#.28HP.29_Pores.2Fstomata pores/stomata]

-Parentage of [http://wiki.plantontology.org:8080/index.php/Categorized_list_of_terms_without_parents#.28HP.29_Trichomes_and_hairs trichomes and hairs]

===2. Publication for TIPS and/or Plant Physiology===

Draft proposal to be submitted to TIPS

===3. PAG Workshop planning===

← Older revision		Revision as of 18:33, 1 November 2010
Line 90:		Line 90:

	===3. PAG Workshop planning===		===3. PAG Workshop planning===
		+
		+	See: [[PAG_2011_Collaborators_Workshop]]

← Older revision		Revision as of 14:56, 1 November 2010
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	-(HP) Parentage of [http://wiki.plantontology.org:8080/index.php/Categorized_list_of_terms_without_parents#.28HP.29_Trichomes_and_hairs trichomes and hairs]		-(HP) Parentage of [http://wiki.plantontology.org:8080/index.php/Categorized_list_of_terms_without_parents#.28HP.29_Trichomes_and_hairs trichomes and hairs]
		+
		+	-(MP) Pollen tube - continue discussion from last week. Maybe categorize with hairs/trichomes

	-(MP) root stele, with new parent term stele		-(MP) root stele, with new parent term stele

← Older revision		Revision as of 14:27, 1 November 2010
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	Ramona and Lol will prioritize these items and prepare suggested definitions for meeting on Friday.		Ramona and Lol will prioritize these items and prepare suggested definitions for meeting on Friday.

		+	Priority rankings reflect priority for discussion at this meeting, not overall priorty for the next release.

	'''From PSO:'''		'''From PSO:'''

@@ Line 1: / Line 1: @@
-Back to
+Back to [[POC_Meeting_and_Workshop_Nov_4th_to_6th,_NYBG,_Bronx,_NY]]
-==Thursday, Nov 4th==
+Ramona and Lol will work on:
 ===1. Ontology Goals: Prepare items for Friday meeting so things can be discussed efficiently===

@@ Line 88: / Line 88: @@
 Draft proposal to be submitted to TIPS
 ===3. PAG Workshop planning===
 See: [[PAG_2011_Collaborators_Workshop]]

@@ Line 32: / Line 32: @@
 (Mixed priority) [[New SF tracker items, fall 2010]]. HP items from this list are: embryo, primordium, vegetative shoot system, egg cell, sperm cell
--(LP) [https://sourceforge.net/tracker/index.php?func=detail&aid=3030644&group_id=76834&atid=835555 Musa terms] requested by Rosemary Shrestha (July 2010) Most of these are synonyms of existing terms. Can deal with these at a phone meeting.
+-(MP) [https://sourceforge.net/tracker/index.php?func=detail&aid=3030644&group_id=76834&atid=835555 Musa terms] requested by Rosemary Shrestha (July 2010) Most of these are synonyms of existing terms. Should move through them quickly.
 -(MP) Adding/modifying the [https://sourceforge.net/tracker/index.php?func=detail&aid=2899934&group_id=76834&atid=835555 root terms] submitted by Rich Zobel (Nov 2009).

@@ Line 73: / Line 73: @@
 '''Suggested Priorities (RW):'''
--[http://wiki.plantontology.org:8080/index.php/Categorized_list_of_terms_without_parents#.28HP.29_Primordium primordium]
+-(HP) [http://wiki.plantontology.org:8080/index.php/Categorized_list_of_terms_without_parents#.28HP.29_Primordium primordium]
--Parentage of [http://wiki.plantontology.org:8080/index.php/Categorized_list_of_terms_without_parents#.28HP.29_Pores.2Fstomata pores/stomata]
+-(HP) Parentage of [http://wiki.plantontology.org:8080/index.php/Categorized_list_of_terms_without_parents#.28HP.29_Pores.2Fstomata pores/stomata]
--Parentage of [http://wiki.plantontology.org:8080/index.php/Categorized_list_of_terms_without_parents#.28HP.29_Trichomes_and_hairs trichomes and hairs]
+-(HP) Parentage of [http://wiki.plantontology.org:8080/index.php/Categorized_list_of_terms_without_parents#.28HP.29_Trichomes_and_hairs trichomes and hairs]
 ===2. Publication for TIPS and/or Plant Physiology===