Summary of Changes to PO July 2012 - Revision history

Cooperl: /* Name changes: */

2014-04-18T00:42:45Z

Name changes:

Cooperl: /* Other changes: */

2012-07-03T01:38:55Z

Other changes:

Cooperl: /* New or modified relations */

2012-07-03T01:31:31Z

New or modified relations

Cooperl: /* New or modified relations */

2012-07-03T01:31:13Z

New or modified relations

Cooperl: /* Other changes: */

2012-07-03T01:30:27Z

Other changes:

Cooperl: /* Updated definitions and/or comments: PAE terms */

2012-07-03T01:29:55Z

Updated definitions and/or comments: PAE terms

Cooperl: /* Other changes: */

2012-07-03T01:28:23Z

Other changes:

Cooperl: /* New or modified relations */

2012-07-02T22:31:53Z

New or modified relations

Cooperl: /* Updated definitions and/or comments: PAE terms */

2012-07-02T22:31:22Z

Updated definitions and/or comments: PAE terms

Cooperl: /* New or modified relations */

2012-07-02T22:28:39Z

New or modified relations

@@ Line 522: / Line 522: @@
 PO:0001027	meristamtic zone formation
 PO:0001000	meristem eloboration
- PO:0007060	obsolete growth and development terms
+PO:0007060	obsolete growth and development terms
- PO:0007532	obsolete plant growth and development terms
+PO:0007532	obsolete plant growth and development terms
- PO:0007061	2.00 main shoot only
+PO:0007061	2.00 main shoot only
- PO:0001030	specialization zone formation
+PO:0001030	specialization zone formation
- PO:0007610	sepals 100% of final size
+PO:0007610	sepals 100% of final size
- PO:0007609	sepals 50% of final size
+PO:0007609	sepals 50% of final size
- PO:0007536	root primordium visible
+PO:0007536	root primordium visible
- PO:0028001	plant life cycle phase
+PO:0028001	plant life cycle phase
- PO:0007075	5.02 20% of inflorescence emerged.
+PO:0007075	5.02 20% of inflorescence emerged.
- PO:0007102	5.04 40% of inflorescence emerged
+PO:0007102	5.04 40% of inflorescence emerged
- PO:0007105	5.06 60% of inflorescence emerged
+PO:0007105	5.06 60% of inflorescence emerged
- PO:0007107	5.08 80% of inflorescence emerged
+PO:0007107	5.08 80% of inflorescence emerged
- PO:0001098	formation of starchy endosperm
+PO:0001098	formation of starchy endosperm
- PO:0007529	E emerged root elongation
+PO:0007529	E emerged root elongation
- PO:0007531	F1 root hair initiation
+PO:0007531	F1 root hair initiation
- PO:0007526	F2 root hair elongation
+PO:0007526	F2 root hair elongation
- PO:0007121	6.01 10% of flowers open
+PO:0007121	6.01 10% of flowers open
- PO:0007124	6.03 30% of flowers open
+PO:0007124	6.03 30% of flowers open
- PO:0007125	6.04 40% of flowers open
+PO:0007125	6.04 40% of flowers open
- PO:0007035	7-8 fruit formation and maturation
+PO:0007035	7-8 fruit formation and maturation
- PO:0007126	7.02 fruit size 20%
+PO:0007126	7.02 fruit size 20%
- PO:0007127	7.04 fruit size 40%
+PO:0007127	7.04 fruit size 40%
- PO:0007128	7.06 fruit size 60%
+PO:0007128	7.06 fruit size 60%
- PO:0007129	7.08 fruit size 80%
+PO:0007129	7.08 fruit size 80%
- PO:0007503	A2.1 root intials differntiation of primary roots
+PO:0007503	A2.1 root intials differntiation of primary roots
- PO:0007528	A2.2 root initials differentiation of lateral roots
+PO:0007528	A2.2 root initials differentiation of lateral roots
- PO:0007530	A2.3 founder cell derivatives of lateral root
+PO:0007530	A2.3 founder cell derivatives of lateral root
- PO:0007534	A2.4 root initials differentiation of crown roots
+PO:0007534	A2.4 root initials differentiation of crown roots
- PO:0007524	B1 primary root meristem formation
+PO:0007524	B1 primary root meristem formation
- PO:0007539	B2 lateral root meristem formation
+PO:0007539	B2 lateral root meristem formation
- PO:0007514	B3 crown root meristem formation
+PO:0007514	B3 crown root meristem formation
- PO:0007521	C3.1 metaxylem differentiation of root.
+PO:0007521	C3.1 metaxylem differentiation of root.
- PO:0007537	C3.2 maturation of phloem elements in root.
+PO:0007537	C3.2 maturation of phloem elements in root.
- PO:0007533	C3.3 maturation of protoxylem elements in root.
+PO:0007533	C3.3 maturation of protoxylem elements in root.
- PO:0021002	calyx absolute size
+PO:0021002	calyx absolute size
- PO:0021003	calyx relationship
+PO:0021003	calyx relationship
- PO:0001028	elongation zone formation
+PO:0001028	elongation zone formation
- PO:0007523	establishment of initial cells
+PO:0007523	establishment of initial cells

@@ Line 183: / Line 183: @@
 Changed name of meristem (PO:0009013) to portion of meristem tissue
@@ Line 192: / Line 199: @@
 Revised comment: Examples include stem (PO:0009047), leaf (PO:0025034), and root (PO:0009005). May include individual cell types that are not part of tissues (e.g., idioblasts (PO:0000283)). A plant organ may have one or more different plant organs as parts, such as sporophyll (PO:0009026) that may have as part a sporangium (PO:0025094) or a carpel that may have as part an plant ovule (PO:0020003).
 Changed definition of pollen sac to say : "A microsporangium that is part of a sporophyll..." rather than "A microsporangium that is located in a sporophyll ...", because it was incorrect use of located in. We are reserving located in for different organisms, and sporangium is still same organism as the sporophyll.
@@ Line 202: / Line 205: @@
 Added protonema develops_from plant spore, because that is what the definition says.
 Moved the following terms from is_a cardinal organ part to is_a cardinal part of MTPS:
@@ Line 226: / Line 226: @@
 Changed definition of fruit proximal end to say it is the proximal end of a fruit, instead of saying it is the stem end of a fruit.
-Updated definition of multi-tissue plant structure (PO:0025496), fruit (PO:0009001).
 Updated comment of plant organ (PO:0009008).

← Older revision		Revision as of 01:31, 3 July 2012
Line 163:		Line 163:


−		+	'''Added relations:'''
−
−	Added relations:

	Added relation "located_in". Need to check on how to link to BFO/RO		Added relation "located_in". Need to check on how to link to BFO/RO

@@ Line 160: / Line 160: @@
 Changed ovule from is_a cardinal organ part to is_a plant organ
-Made embryo sac part_of ovarian ovule instead of part of ovule.
+Made embryo sac part_of ovarian ovule instead of part of ovule
@@ Line 177: / Line 179: @@
 stamen primordium develops_from stamen anlagen
+embryo sac part_of plant ovary ovule changed to '''located_in'''
 ==Other changes:==

← Older revision		Revision as of 01:30, 3 July 2012
Line 184:		Line 184:


−	~~Changed embryo sac part_of plant ovary ovule to located_in. Will change others later, after we see how it works.~~

	Made collective organ part structure (PO:0025269) a child of new CPS (PO:0025497), revised def'n: A collective plant structure (PO:0025497) composed of two or more cardinal organ parts (PO:0025001) from adjacent plant organs (PO:0009008) and any associated portions of plant tissue (PO:0009007).		Made collective organ part structure (PO:0025269) a child of new CPS (PO:0025497), revised def'n: A collective plant structure (PO:0025497) composed of two or more cardinal organ parts (PO:0025001) from adjacent plant organs (PO:0009008) and any associated portions of plant tissue (PO:0009007).

← Older revision		Revision as of 01:29, 3 July 2012
Line 59:		Line 59:

	phyllome anlagen (added "part_of peripheral zone (PO:0000225)" to definition of, relation was already there)		phyllome anlagen (added "part_of peripheral zone (PO:0000225)" to definition of, relation was already there)
		+
		+
		+	antiraphe, chalaza, integument, nucellus, raphe, funicle (Added comment and added PO ids to their definitions)
		+

← Older revision		Revision as of 01:28, 3 July 2012
Line 179:		Line 179:
	Changed name of meristem (PO:0009013) to portion of meristem tissue		Changed name of meristem (PO:0009013) to portion of meristem tissue

−	~~Added comment to antiraphe, chalaza, integument, nucellus, and raphe and funicle, and added PO ids to their definitions.~~

	Changed embryo sac part_of plant ovary ovule to located_in. Will change others later, after we see how it works.		Changed embryo sac part_of plant ovary ovule to located_in. Will change others later, after we see how it works.

@@ Line 175: / Line 175: @@
-Other:
+==Other changes:==
 Changed name of meristem (PO:0009013) to portion of meristem tissue
 Added comment to antiraphe, chalaza, integument, nucellus, and raphe and funicle, and added PO ids to their definitions.
 Changed embryo sac part_of plant ovary ovule to located_in. Will change others later, after we see how it works.
 Made collective organ part structure (PO:0025269) a child of new CPS (PO:0025497), revised def'n: A collective plant structure (PO:0025497) composed of two or more cardinal organ parts (PO:0025001) from adjacent plant organs (PO:0009008) and any associated portions of plant tissue (PO:0009007).

@@ Line 72: / Line 72: @@
 cotyldeon primordium
 gynoecium primordium
 lateral root primordium

← Older revision		Revision as of 22:28, 2 July 2012
Line 161:		Line 161:


		+	Added relations:

		+	Added relation "located_in". Need to check on how to link to BFO/RO

−	~~Added relations:~~
	bract primordium develops_from bract anlagen		bract primordium develops_from bract anlagen

Line 176:		Line 177:


		+	Other:

	Changed name of meristem (PO:0009013) to portion of meristem tissue		Changed name of meristem (PO:0009013) to portion of meristem tissue

		+	Added comment to antiraphe, chalaza, integument, nucellus, and raphe and funicle, and added PO ids to their definitions.

−	~~Other:~~

−	~~Added comment to Antiraphe, chalaza, integument, nucellus, and raphe and funicle, and added PO ids to their definitions.~~
−
−	~~Added relation "located_in". Need to check on how to link to BFO/RO~~