Release 19 - Revision history

Cooperl: /* Other Changes */

2014-04-18T01:00:07Z

Other Changes

Cooperl: /* Other Changes */

2014-04-18T00:52:24Z

Other Changes

Cooperl: /* Revisions to the plant anatomical entity branch: */

2013-01-04T14:48:04Z

Revisions to the plant anatomical entity branch:

Cooperl: /* Revisions to the plant anatomical entity branch: */

2013-01-04T14:45:54Z

Revisions to the plant anatomical entity branch:

Cooperl: /* Revisions to the plant anatomical entity branch: */

2013-01-04T14:38:33Z

Revisions to the plant anatomical entity branch:

Cooperl: /* Revisions to the plant anatomical entity branch: */

2013-01-04T14:37:36Z

Revisions to the plant anatomical entity branch:

Cooperl: /* Revisions to the plant anatomical entity branch: */

2013-01-04T14:35:36Z

Revisions to the plant anatomical entity branch:

Cooperl: /* Revisions to the plant anatomical entity branch: */

2013-01-04T14:32:21Z

Revisions to the plant anatomical entity branch:

Cooperl: /* Revisions to the plant anatomical entity branch: */

2013-01-04T14:31:19Z

Revisions to the plant anatomical entity branch:

Cooperl: /* Summary and Announcements */

2013-01-04T14:26:21Z

Summary and Announcements

← Older revision		Revision as of 01:00, 18 April 2014
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	* [[New_terms_and_obsolete_terms_Release_19]]		* [[New_terms_and_obsolete_terms_Release_19]]

−	* For more information and to view a summary of the release statistics, please visit: [http://archive.plantontology.org/docs/release_notes/releasenotes19.html Plant Ontology Release #19 ~~December 2012~~].	+	* For more information and to view a summary of the release statistics, please visit: [http://archive.plantontology.org/docs/release_notes/releasenotes19.html Plant Ontology Release #19 Jan 2013].

← Older revision		Revision as of 00:52, 18 April 2014
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	* [[New_terms_and_obsolete_terms_Release_19]]		* [[New_terms_and_obsolete_terms_Release_19]]

−	* For more information and to view a summary of the release statistics, please visit: [http://~~www~~.plantontology.org/docs/release_notes/~~index~~.html ~~Current~~ Release ~~Notes Page~~].	+	* For more information and to view a summary of the release statistics, please visit: [http://archive.plantontology.org/docs/release_notes/releasenotes19.html Plant Ontology Release #19 December 2012].

@@ Line 22: / Line 22: @@
 ** ''leaf lamina crena'' (PO:0025519)
-If you are annotating to the latter three terms (describing leaf lamina), please add an additional annotation to vascular leaf (PO:0009025) or non-vascular leaf (PO:0025075), depending on the species. All annotations for angiosperms, gymnosperms, and pteridophytes (ferns) should go to vascular leaf (PO:0009025) and all annotations for bryophytes should go to non-vascular leaf (PO:0025075).
+If you are annotating to the latter three terms (describing ''leaf lamina''), please add an additional annotation to ''vascular leaf'' (PO:0009025) or ''non-vascular leaf'' (PO:0025075), depending on the species. All annotations for angiosperms, gymnosperms, and pteridophytes (ferns) should go to ''vascular leaf'' (PO:0009025) and all annotations for bryophytes should go to ''non-vascular leaf'' (PO:0025075).
-* The term plant gametangium has been renamed multicellular plant gametangium (PO:0025124) and a new child term created: unicellular plant gametangium (PO:0025521). This allows use to differentiate between the gametangia that are plant organs and the ones which are a single cell, such as those that occur in some green alga, such as Ulva.
+* The term ''plant gametangium'' has been renamed ''multicellular plant gametangium'' (PO:0025124) and a new child term created: ''unicellular plant gametangium'' (PO:0025521). This allows users to differentiate between the gametangia that are plant organs and the ones which are a single cell, such as those that occur in some green alga, such as Ulva.
-* Major revisions were done to the sections describing the multicellular plant gametangia (PO:0025124): archegonium (PO:0025126) and antheridium (PO:0025125) and their parts, including the addition of four new cell types:
+* Major revisions were done to the sections describing the ''multicellular plant gametangia'' (PO:0025124): ''archegonium'' (PO:0025126) and ''antheridium'' (PO:0025125) and their parts.
 ** archegonium central cell (PO:0025509)
 ** archegonium initial cell (PO:0025510)

@@ Line 14: / Line 14: @@
 * A new general term for all types of ''spermatogenous cell'' (PO:0025525) has been added to the Plant Ontology.  For data annotations in liverworts, hornworts and mosses, please use the term ''spermatogenous cell''. For angiosperm species, please use the more specific term ''generative cell'' (PO:0020097), and for gymnosperms, the new term ''body cell'' (PO:0025526).
-* New terms to describe shape of the phyllome and leaf lamina were added:
+* New terms to describe shape of the ''phyllome lamina'' (PO:0025396) and ''leaf lamina'' (PO:0020039) were added:
 ** ''phyllome lamina lobe'' (PO:0025514)
 ** ''phyllome lamina tooth'' (PO:0025515)

@@ Line 12: / Line 12: @@
 * A new parent term for all types of ''tuber'' (PO:0025522) has been created.  This encompasses those tubers derived from branches; ''shoot axis tuber'' (PO:0004543), and those that arise from roots; ''tuberous root tuber'' (new term; PO:0025476).  Data associated with tubers from plants such Cassava (''Manihot esculenta'') or sweet potato (''Ipomoea batatas''), should be annotated to the new term ''tuberous root tuber'' (PO:0025476), while that associated with tubers derived from a ''branch'' (PO:0025073), as found in potatoes (Solanum spp.) and yams (Dioscorea spp.), should use the one of the two subclasses of the term ''shoot axis tuber'' (PO:0004543); either ''aerial tuber'' (PO:0004548), or ''subterranean tuber'' (PO:0004547).
-* A new general term for all types of ''spermatogenous cell'' (PO:0025525) has been added to the Plant Ontology.  For data annotations in liverworts, hornworts and mosses, please use the term the 'spermatogenous cell'. For angiosperm species, please use the more specific term ''generative cell'' (PO:0020097), and for gymnosperms, the new term ''body cell'' (PO:0025526).
+* A new general term for all types of ''spermatogenous cell'' (PO:0025525) has been added to the Plant Ontology.  For data annotations in liverworts, hornworts and mosses, please use the term ''spermatogenous cell''. For angiosperm species, please use the more specific term ''generative cell'' (PO:0020097), and for gymnosperms, the new term ''body cell'' (PO:0025526).
 * New terms to describe shape of the phyllome and leaf lamina were added:

@@ Line 10: / Line 10: @@
 =Revisions to the ''plant anatomical entity'' branch:=
-* A new parent term for all types of '''tuber''' (PO:0025522) has been created.  This encompasses those tubers derived from branches; '''shoot axis tuber' (PO:0004543), and those that arise from roots; 'tuberous root tubers' (new term; PO:0025476).  Data associated with tubers from plants such Cassava (''Manihot esculenta'') or sweet potato (''Ipomoea batatas''), should be annotated to the new term 'tuberous root tuber' (PO:0025476), while that associated with tubers from branches (PO:0025073), as found in potatoes (Solanum spp.) and yams (Dioscorea spp.), should use the term 'shoot axis tuber' (PO:0004543), 'aerial tuber' (PO:0004548), or 'subterranean tuber' (PO:0004547).
+* A new parent term for all types of ''tuber'' (PO:0025522) has been created.  This encompasses those tubers derived from branches; ''shoot axis tuber'' (PO:0004543), and those that arise from roots; ''tuberous root tuber'' (new term; PO:0025476).  Data associated with tubers from plants such Cassava (''Manihot esculenta'') or sweet potato (''Ipomoea batatas''), should be annotated to the new term ''tuberous root tuber'' (PO:0025476), while that associated with tubers derived from a ''branch'' (PO:0025073), as found in potatoes (Solanum spp.) and yams (Dioscorea spp.), should use the one of the two subclasses of the term ''shoot axis tuber'' (PO:0004543); either ''aerial tuber'' (PO:0004548), or ''subterranean tuber'' (PO:0004547).
 * A new general term for all types of 'spermatogenous cell' (PO:0025525) has been added to the Plant Ontology.  Data annotations for angiosperm species should use the more specific term 'generative cell' (PO:0020097), and for gymnosperms, please use the new term 'body cell' (PO:0025526). In liverworts, hornworts and mosses, please use the term the 'spermatogenous cell'.
 * New terms to describe shape of the phyllome and leaf lamina were added:
-** phyllome lamina lobe (PO:0025514)
+** ''phyllome lamina lobe'' (PO:0025514)
-** phyllome lamina tooth (PO:0025515)
+** ''phyllome lamina tooth'' (PO:0025515)
-** phyllome lamina crena (PO:0025516)
+** ''phyllome lamina crena'' (PO:0025516)
-** leaf lamina lobe (PO:0025517)
+** ''leaf lamina lobe'' (PO:0025517)
-** leaf lamina tooth (PO:0025518)
+** ''leaf lamina tooth'' (PO:0025518)
-** leaf lamina crena (PO:0025519)
+** ''leaf lamina crena'' (PO:0025519)
 If you are annotating to the latter three terms (describing leaf lamina), please add an additional annotation to vascular leaf (PO:0009025) or non-vascular leaf (PO:0025075), depending on the species. All annotations for angiosperms, gymnosperms, and pteridophytes (ferns) should go to vascular leaf (PO:0009025) and all annotations for bryophytes should go to non-vascular leaf (PO:0025075).

@@ Line 2: / Line 2: @@
 The latest release of the Plant Ontology, version #19, is available on our [http://www.plantontology.org/amigo/go.cgi Plant Ontology Browser].
-This full release features the addition of  35 new terms, for both the ''Plant Anatomical Entity'' (20) and ''Plant Structure Development Stage'' (15) branches. It also includes It also includes new and updated annotation data for <i>Oryza sativa</i>, <i>Vitis vinifera</i>, <i>Gossypium hirsutum</i> and <i>Arabidopsis thaliana</i>.
+This full release features the addition of  35 new terms, for both the ''Plant Anatomical Entity'' (20) and ''Plant Structure Development Stage'' (15) branches. It also includes new and updated annotation data for <i>Oryza sativa</i>, <i>Vitis vinifera</i>, <i>Gossypium hirsutum</i> and <i>Arabidopsis thaliana</i>.
 This release also includes a new feature: Japanese translations displayed on the browser for the ''Plant Anatomical Entity'' terms.