Related Publications - Revision history

Cooperl: /* 2006 */

2014-07-13T00:43:23Z

2006

Cooperl: /* 2007 */

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2007

Cooperl: /* 2008 */

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Cooperl: /* 2012 */

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2012

Cooperl: /* 2013 */

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Cooperl at 17:32, 13 May 2013

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 *Ontologies for data and knowledge sharing in biology: plant ROS signaling as a case study. [[http://www3.interscience.wiley.com/cgi-bin/abstract/112279243/ABSTRACT?CRETRY=1&SRETRY=0 Abstract]] [[http://www3.interscience.wiley.com/cgi-bin/fulltext/112279243/PDFSTART Full Text]]<br />[http://www3.interscience.wiley.com/cgi-bin/jhome/34201 Bioessays], 2006, Vol28(2): 199-210.<br />
-*'''Whole-plant growth stage ontology for angiosperms and its application in plant biology.''' [[http://www.plantphysiol.org/cgi/content/abstract/142/2/414 Abstract]] [[http://www.plantphysiol.org/cgi/content/full/142/2/414 Full Text]]<br />[http://www.plantphysiol.org/ Plant Physiology], 2006, 142: 414-428
+*Pujar et al, 2006.'''Whole-plant growth stage ontology for angiosperms and its application in plant biology.''' [[http://www.plantphysiol.org/cgi/content/abstract/142/2/414 Abstract]] [[http://www.plantphysiol.org/cgi/content/full/142/2/414 Full Text]]<br />[http://www.plantphysiol.org/ Plant Physiology], 2006, 142: 414-428
 ==2005==

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 *The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration”, Nature Biotechnology,25 (11), November 2007, 1251 -1255. [[http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Smith et al, 2007]]
-*'''The Plant Structure Ontology, a unified vocabulary of anatomy and morphology of a flowering plant.''' [[http://www.plantphysiol.org/cgi/content/abstract/143/2/587 Abstract]] [[http://www.plantphysiol.org/cgi/content/full/143/2/587 Full Text]]<br />[http://www.plantphysiol.org/ Plant Physiology], 2007, 143: 587-599 <br />
+*Ilic et al, 2007.'''The Plant Structure Ontology, a unified vocabulary of anatomy and morphology of a flowering plant.''' [[http://www.plantphysiol.org/cgi/content/abstract/143/2/587 Abstract]] [[http://www.plantphysiol.org/cgi/content/full/143/2/587 Full Text]]<br />[http://www.plantphysiol.org/ Plant Physiology], 2007, 143: 587-599 <br />
 ==2006==

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 ==2008==
-*Ilic et al, 2008. '''Plant Structure Ontology (PSO) - A morphological and anatomical ontology of flowering plants.''' In ''Anatomy Ontologies for Bioinformatics'', Springer, 2008, p 27-42. [http://www.springer.com/computer/computational+biology+and+bioinformatics/book/978-1-84628-884-5 Book]
+*Ilic et al, 2008. '''Plant Structure Ontology (PSO) - A morphological and anatomical ontology of flowering plants.''' In ''Anatomy Ontologies for Bioinformatics'', Springer, p 27-42. [http://www.springer.com/computer/computational+biology+and+bioinformatics/book/978-1-84628-884-5 Book]
 *Avraham et al, 2008.'''The Plant Ontology Database: a community resource for plant structure and development stages controlled vocabulary and annotations.''' [http://nar.oxfordjournals.org/cgi/content/abstract/36/suppl_1/D449 Abstract] [http://nar.oxfordjournals.org/cgi/content/full/36/suppl_1/D449 Full Text]]<br />[http://nar.oxfordjournals.org/cgi/content/full/36/suppl_1/D449 Nucleic Acid Research], 36(Database issue):D449-D454

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 ==2008==
-*Avraham et al, 2008. '''Plant Structure Ontology (PSO) - A morphological and anatomical ontology of flowering plants.''' In ''Anatomy Ontologies for Bioinformatics'', Springer, 2008, p 27-42. [http://www.springer.com/computer/computational+biology+and+bioinformatics/book/978-1-84628-884-5 Book]
+*Ilic et al, 2008. '''Plant Structure Ontology (PSO) - A morphological and anatomical ontology of flowering plants.''' In ''Anatomy Ontologies for Bioinformatics'', Springer, 2008, p 27-42. [http://www.springer.com/computer/computational+biology+and+bioinformatics/book/978-1-84628-884-5 Book]
 *Avraham et al, 2008.'''The Plant Ontology Database: a community resource for plant structure and development stages controlled vocabulary and annotations.''' [http://nar.oxfordjournals.org/cgi/content/abstract/36/suppl_1/D449 Abstract] [http://nar.oxfordjournals.org/cgi/content/full/36/suppl_1/D449 Full Text]]<br />[http://nar.oxfordjournals.org/cgi/content/full/36/suppl_1/D449 Nucleic Acid Research], 36(Database issue):D449-D454

@@ Line 12: / Line 12: @@
 ==2008==
-*'''Plant Structure Ontology (PSO) - A morphological and anatomical ontology of flowering plants.''' In ''Anatomy Ontologies for Bioinformatics'', Springer, 2008, p 27-42. [http://www.springer.com/computer/computational+biology+and+bioinformatics/book/978-1-84628-884-5 Book]
+*Avraham et al, 2008. '''Plant Structure Ontology (PSO) - A morphological and anatomical ontology of flowering plants.''' In ''Anatomy Ontologies for Bioinformatics'', Springer, 2008, p 27-42. [http://www.springer.com/computer/computational+biology+and+bioinformatics/book/978-1-84628-884-5 Book]
 *Avraham et al, 2008.'''The Plant Ontology Database: a community resource for plant structure and development stages controlled vocabulary and annotations.''' [http://nar.oxfordjournals.org/cgi/content/abstract/36/suppl_1/D449 Abstract] [http://nar.oxfordjournals.org/cgi/content/full/36/suppl_1/D449 Full Text]]<br />[http://nar.oxfordjournals.org/cgi/content/full/36/suppl_1/D449 Nucleic Acid Research], 36(Database issue):D449-D454

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 *'''Plant Structure Ontology (PSO) - A morphological and anatomical ontology of flowering plants.''' In ''Anatomy Ontologies for Bioinformatics'', Springer, 2008, p 27-42. [http://www.springer.com/computer/computational+biology+and+bioinformatics/book/978-1-84628-884-5 Book]
-*'''The Plant Ontology Database: a community resource for plant structure and development stages controlled vocabulary and annotations.''' [http://nar.oxfordjournals.org/cgi/content/abstract/36/suppl_1/D449 Abstract] [http://nar.oxfordjournals.org/cgi/content/full/36/suppl_1/D449 Full Text]]<br />[http://nar.oxfordjournals.org/cgi/content/full/36/suppl_1/D449 Nucleic Acid Research], 2008, 36(Database issue):D449-D454
+*Avraham et al, 2008.'''The Plant Ontology Database: a community resource for plant structure and development stages controlled vocabulary and annotations.''' [http://nar.oxfordjournals.org/cgi/content/abstract/36/suppl_1/D449 Abstract] [http://nar.oxfordjournals.org/cgi/content/full/36/suppl_1/D449 Full Text]]<br />[http://nar.oxfordjournals.org/cgi/content/full/36/suppl_1/D449 Nucleic Acid Research], 36(Database issue):D449-D454
 ==2007==

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 ==2012==
-* Lens et al. 2012. '''An extension of the Plant Ontology project supporting wood anatomy and development research.''' IAWA Journal 33: 113–117.
+* Lens et al. 2012. '''An extension of the Plant Ontology project supporting wood anatomy and development research.''' [http://bio.kuleuven.be/sys/iawa/IAWA%20J%20pdf%27s/33.no1-4.2012/IAWA%20J%2033%20%282%29%20113-117.pdf IAWA Journal] 33: 113–117.
 * Walls et al (2012). '''A plant disease extension of the Infectious Disease Ontology.''' In ''[http://ceur-ws.org/Vol-897/ Proceedings 3rd International Conference on Biomedical Ontology]'', Medical University of Graz, Graz, Austria.

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 ==2013==
-* Cooper and Walls et al (2013). '''The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses'''. Plant and Cell Physiology 54: e1–e1
+* Cooper and Walls et al (2013). '''[http://pcp.oxfordjournals.org/content/54/2/e1.full The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses]'''. Plant and Cell Physiology 54: e1–e1
 ==2012==

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 ==2012==
-* Walls et al (2012)'''Ontologies as integrative tools for plant science.''' [http://www.amjbot.org/content/99/8/1263 American Journal of Botany] 99: 1263 –1275 (special invited paper).
+* Arnaud, et al (2012). '''Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotypes'''. Proceedings of the International Conference on Knowledge Engineering and Ontology Development. Barcelona, Spain, pp 220–225
-* Arnaud, et al (2012). '''Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotypes'''. Proceedings of the International Conference on Knowledge Engineering and Ontology Development. Barcelona, Spain, pp 220–225
+* Walls et al (2012). '''Ontologies as integrative tools for plant science.''' [http://www.amjbot.org/content/99/8/1263 American Journal of Botany] 99: 1263 –1275 (special invited paper).
 ==2008==

← Older revision		Revision as of 17:32, 13 May 2013
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−	*'''Ontologies as integrative tools for plant science.''' [http://www.amjbot.org/content/99/8/1263 American Journal of Botany] 99: 1263 –1275 (special invited paper).	+	* Walls et al (2012)'''Ontologies as integrative tools for plant science.''' [http://www.amjbot.org/content/99/8/1263 American Journal of Botany] 99: 1263 –1275 (special invited paper).

	*'''A plant disease extension of the Infectious Disease Ontology.''' In ''[http://ceur-ws.org/Vol-897/ Proceedings 3rd International Conference on Biomedical Ontology]'', Medical University of Graz, Graz, Austria.		*'''A plant disease extension of the Infectious Disease Ontology.''' In ''[http://ceur-ws.org/Vol-897/ Proceedings 3rd International Conference on Biomedical Ontology]'', Medical University of Graz, Graz, Austria.