Physco growth conditions mapped to EO - Revision history

Cooperl at 14:52, 15 November 2011

2011-11-15T14:52:45Z

Cooperl at 02:10, 15 November 2011

2011-11-15T02:10:09Z

Cooperl at 01:30, 15 November 2011

2011-11-15T01:30:27Z

Cooperl at 01:29, 15 November 2011

2011-11-15T01:29:53Z

Cooperl at 22:02, 9 November 2011

2011-11-09T22:02:29Z

Cooperl at 22:02, 9 November 2011

2011-11-09T22:02:19Z

Cooperl: /* List from MH (08/25/2011, by email) */

2011-11-09T19:18:14Z

List from MH (08/25/2011, by email)

Cooperl: /* Mappings to the EO */

2011-11-09T18:58:33Z

Mappings to the EO

Cooperl at 18:58, 9 November 2011

2011-11-09T18:58:20Z

Cooperl at 18:56, 9 November 2011

2011-11-09T18:56:33Z

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 Also see [http://www.cosmoss.org/ Cosmoss], the ''Physcomitrella patens'' resource site.
+[https://docs.google.com/spreadsheet/ccc?key=0Ar1O1Y7eIKhsdGx4SUh6cTV0bmJxSWRyTmQ1Z3FEV0E Phsyco_mapping]
 Go to:[[Background info on Physco biology and culture]]

← Older revision		Revision as of 02:10, 15 November 2011
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	Also see [http://www.cosmoss.org/ Cosmoss], the ''Physcomitrella patens'' resource site.		Also see [http://www.cosmoss.org/ Cosmoss], the ''Physcomitrella patens'' resource site.
		+

← Older revision		Revision as of 01:30, 15 November 2011
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	Go back to: [[Cosmoss-_Physcomitrella]] page		Go back to: [[Cosmoss-_Physcomitrella]] page
		+
		+	Also see [http://www.cosmoss.org/ Cosmoss], the ''Physcomitrella patens'' resource site.
		+

	Go to:[[Background info on Physco biology and culture]]		Go to:[[Background info on Physco biology and culture]]

← Older revision		Revision as of 01:29, 15 November 2011
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		+	Go back to: [[Cosmoss-_Physcomitrella]] page
		+
	Go to:[[Background info on Physco biology and culture]]		Go to:[[Background info on Physco biology and culture]]

← Older revision		Revision as of 22:02, 9 November 2011
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−	Go to: [[Background info on Physco biology and culture]]	+	Go to:[[Background info on Physco biology and culture]]

	'''List from MH (08/25/2011, by email)'''		'''List from MH (08/25/2011, by email)'''

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-=List from MH (08/25/2011, by email)=
+'''List from MH (08/25/2011, by email)'''
 We did:
@@ Line 28: / Line 28: @@
 Best,
 Manuel
 =Mappings to the [http://www.gramene.org/plant_ontology/ontology_browse.html#eo EO]=

← Older revision		Revision as of 18:58, 9 November 2011
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	* strong light (800µmol)		* strong light (800µmol)
−
−
−

	* dark (2 and 3 weeks) - EO:0007270 continuous dark (no light) regimen		* dark (2 and 3 weeks) - EO:0007270 continuous dark (no light) regimen

@@ Line 1: / Line 1: @@
-'''List from MH (08/25/2011, by email)'''
+=List from MH (08/25/2011, by email)=
 We did:
@@ Line 31: / Line 31: @@
-'''Mappings to the [http://www.gramene.org/plant_ontology/ontology_browse.html#eo EO]:'''
+=Mappings to the [http://www.gramene.org/plant_ontology/ontology_browse.html#eo EO]=
-leaflet time series (different time points after detaching the leaflet) – no EO mapping. Leaflet in this case means non-vascular leaf.
+* leaflet time series (different time points after detaching the leaflet) – no EO mapping. Leaflet in this case means non-vascular leaf.
+* sun light - EO:0007193 day light intensity
-sun light - EO:0007193 day light intensity
+* strong light - EO:0007075  high light intensity regimen
 ''LC:  I would suggest reversing these two as we now have additional info about the actual light intensities.  Also, these EO terms are not actually defined.''
-sun light (up to 1000µmol)
+* sun light (up to 1000µmol)
-rehydration - EO:0007383 watering regimen
+* strong light (800µmol)
-Solid media:	tissue culture growth media EO:0007266
+* Solid media:	tissue culture growth media EO:0007266
 Def'n: 	The treatment involving use of solid growth media for growing the plants or tissue cultured samples
-liquid growth media (EO:0007265)
+* liquid growth media (EO:0007265)

@@ Line 2: / Line 2: @@
 We did:
-- germinating spores PO:0025017
+* germinating spores PO:0025017
-- protonema PO:0030003, here we have the protonema in liquid culture (minmal medium and full medium) and on agar (solid)
+* protonema PO:0030003, here we have the protonema in liquid culture (minmal medium and full medium) and on agar (solid)
-- gametophores (early stage) PO:0030018
+* gametophore (early stage) PO:0030018
-- gametophores (later stage, gametangia visible) PO:0030018, here we also have data for a strain collected here in Germany from Freiburg Reute (I hope this will find a place in the PO)
+* gametophores (later stage, gametangia visible) PO:0030018, here we also have data for a strain collected here in Germany from Freiburg Reute (I hope this ill find a place in the PO)
-- non-vascular leaf PO:0025075
+* non-vascular leaf PO:0025075
-- protoplasts PO:0000006
+* protoplasts PO:0000006
 At the moment all the experiments are assigned to a specific plant anatomy but they could also be added at the corresponding growth stage. As for the protonema I'm not sure if the different growth conditions can somehow be included. If not we would prefer to add the protonema in minimal medium liquid culture.
@@ Line 14: / Line 14: @@
 Here follows the list of stress treatments that we have done so far:
-- leaflet time series (different time points after detaching the leaflet)
+* leaflet time series (different time points after detaching the leaflet)
-- sun light
+* sun light
-- strong light
+* strong light
-- dark (2 and 3 weeks)
+* dark (2 and 3 weeks)
-- dehydration
+* dehydration
-- rehydration
+* rehydration
-- UV light
+* UV light
-- Abscisic acid
+* Abscisic acid
-- botrytis infection
+* botrytis infection
 Please contact me again if the format isn't as you expected or if you have any questions.