POC Conf. Call 7-14-10 - Revision history

Cooperl: /* Upcoming Conferences and Meetings: Updates: */

2010-07-19T22:01:36Z

Upcoming Conferences and Meetings: Updates:

Rwalls: /* Older unresolved terms */

2010-07-15T13:11:31Z

Older unresolved terms

Rwalls: /* Review of changes discussed at POC Meeting and Workshop June 29-30th, Corvallis */

2010-07-15T12:45:29Z

Review of changes discussed at POC Meeting and Workshop June 29-30th, Corvallis

Rwalls: /* Review of changes discussed at POC Meeting and Workshop June 29-30th, Corvallis */

2010-07-15T12:44:05Z

Review of changes discussed at POC Meeting and Workshop June 29-30th, Corvallis

Rwalls: /* Review of changes discussed at POC Meeting and Workshop June 29-30th, Corvallis */

2010-07-15T12:30:56Z

Review of changes discussed at POC Meeting and Workshop June 29-30th, Corvallis

Rwalls: /* Preparations for next release */

2010-07-15T12:28:28Z

Preparations for next release

Rwalls: /* International Botanical Congress (IBC2011). July 23rd-30th 2011, Melbourne, Australia */

2010-07-15T12:26:31Z

International Botanical Congress (IBC2011). July 23rd-30th 2011, Melbourne, Australia

Cooperl at 17:06, 14 July 2010

2010-07-14T17:06:45Z

Cooperl: /* Report from the Bio-Ontologies 2010: Semantic Applications in Life Sciences. Conference */

2010-07-14T17:01:12Z

Report from the Bio-Ontologies 2010: Semantic Applications in Life Sciences. Conference

Cooperl: /* Preparations for next release */

2010-07-14T16:25:57Z

Preparations for next release

@@ Line 305: / Line 305: @@
 PO Poster presentation, Outreach Booth and Annotation Workshop with Gramene.
-Laurel is organizing a booth with other database groups: Gramene, SGN, maizeGDB, TAIR and BAR.
+Laurel is organizing a [http://wiki.plantontology.org:8080/index.php/Plant_Genome_Resources Outreach Booth] with other database groups: Gramene, SGN, maizeGDB, TAIR and BAR.
 We should prepare a brochure to distribute, similar to the one Gramene has.

@@ Line 222: / Line 222: @@
 Should we include develops_from gynoecium relation?
@@ Line 243: / Line 247: @@
 -See [http://plantontology.org/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=PO:0000010&session_id=3880b1272975931/ Cultured embryo PO:0000010] for definition of in vitro plant embryo
 '''3. stalk  (PO:0025066)'''

@@ Line 171: / Line 171: @@
 Need to determine if tubers are always determinate and if rhizomes are always indeterminate.
-''Changes for tuber and stolon were accepted. Agreed that both tubers and rhizomes should be both determinate or indeterminate, so that should not be part of the definition.''
+''Changes for tuber and stolon were accepted. Agreed that both tubers and rhizomes could be both determinate or indeterminate, so that should not be part of the definition.''
 ''Some discussion of rhizomes. In ferns and many monocots, rhizomes are the primary axis, so they should be child of stem, not branch. Suggest making rhizome direct child of shoot axis, so that it can encompass cases where the rhizome is either a primary or secondary axis. Need to make Source Forge item for rhizome.''

@@ Line 129: / Line 129: @@
 Last week's minutes say that a stem has parts nodes and internodes, but any shoot axis could have nodes and internodes, therefore, that should perhaps go here, instead of under stem. Also, should it be what a comment rather than part of definition, if we want to include moss or liverwort stems?
 [[File:Plant_axis.jpg]]
 '''5.''' [https://sourceforge.net/tracker/?func=detail&aid=2982923&group_id=76834&atid=835555 '''stem'''] was made a child of shoot axis. Proposed definition: A shoot axis that is the primary axis of a plant.
@@ Line 139: / Line 144: @@
 *Will do this '''after''' we agree on final definitions for stem and shoot terms.
 '''6.''' Made new term [https://sourceforge.net/tracker/?func=detail&aid=3028442&group_id=76834&atid=835555 branch] (PO:0025073): A shoot axis that develops from an axillary meristem or from equal divisions of the shoot apical meristem. Narrow synonyms: secondary axis, tertiary axis, higher-order axis.
@@ Line 160: / Line 169: @@
 Rhizome: A branch that grows horizontally and produces shoots above and roots or rhizoids below. Comment: Usually produces scale-like leaves. May produce rhizoids, especially in Pteridophytes.
-'''Need to determine if tubers are always determinate and if rhizomes are always indeterminate.'''
+Need to determine if tubers are always determinate and if rhizomes are always indeterminate.
@@ Line 176: / Line 189: @@
 >>>cotyledon (PO:0020030): A leaf formed at the first node of a sporophyte.
 ===Older unresolved terms===

@@ Line 84: / Line 84: @@
 -Also deleted the temporary terms gametophytic cell and sporophytic cell.
@@ Line 91: / Line 94: @@
 -egg cell (PO:0020094) was part_of egg apparatus, but this does not allow for eggs that are not in angiosperms. Therefore, changed relation to egg_apparatus has_part egg cell.
@@ Line 107: / Line 113: @@
 Vascular system (PO:0000034) could be a child of plant structure system, may be better as child of portion of vascular tissue.

← Older revision	Revision as of 12:28, 15 July 2010
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−	+	''General agreement that we would like to have the beta version out before travel to our respective meeting at the end of July. Goal is to have test file ready for upload to beta by 7/21/2010.
	+	''

← Older revision		Revision as of 12:26, 15 July 2010
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	Important dates (http://www.ibc2011.com/Dates.htm)		Important dates (http://www.ibc2011.com/Dates.htm)
		+
		+	''Pankaj received approval from OSU for international travel. Ramona and Dennis will work to secure approval for funding for Ramona. Still waiting to hear from Angelica, will ask for extension on time.''

	===Preparations for next release===		===Preparations for next release===

@@ Line 2: / Line 2: @@
 In attendance:
-POC members:
+Absent: Alejandra Gandolfo, (Cornell University), Barry Smith (University at Buffalo, NY), Chris Mungall (Lawrence Berkeley National Lab).
-Absent:
+Collaborators: Rex Nelson
+Acceptance of the minutes from the 6-30-10 meeting? All in favor? ''There were no additions, deletions or changes to the minutes of the last meeting.''
 ===Report from the Bio-Ontologies 2010: Semantic Applications in Life Sciences. Conference===

@@ Line 15: / Line 15: @@
 July 9th and 10th, 2010, Boston, Mass. Satellite Interest Group (SIG) meeting preceding the International Society for Computational Biology (ISCB).
--Laurel and Ramona attended and presented a and poster. Ramona presented a 'flash update talk' [http://www.bio-ontologies.org.uk/programme BioOntologies program].
+-Laurel and Ramona attended and presented a poster. Ramona presented a 'flash update talk' [http://www.bio-ontologies.org.uk/programme BioOntologies program].
 -Had discussions/meetings with people from OBI (Helen Parkinson), Cell Ontology (Terry Meehan), GCP Crop Ontology (Rosemary Shrestha), BioPortal (Trish Whetzal) and many others.

@@ Line 43: / Line 43: @@
 * Review recent changes (see next agenda item)
+- We have made a number of changes that need to be reviewed and approved
 * Finish edits related to recent changes (parts of stem/shoot)