POC Conf. Call 7-05-11 - Revision history

Cooperl at 18:23, 22 July 2011

2011-07-22T18:23:18Z

Rwalls: /* Meeting with Morphobank this afternoon */

2011-07-07T18:24:30Z

Meeting with Morphobank this afternoon

Cooperl: /* phyllode */

2011-07-06T16:37:51Z

phyllode

Cooperl: /* banner, wing and keel */

2011-07-06T16:37:27Z

banner, wing and keel

Cooperl: /* Upcoming meetings 2011: */

2011-07-06T16:16:39Z

Upcoming meetings 2011:

Cooperl: /* Meeting with Morphobank this afternoon */

2011-07-06T16:13:53Z

Meeting with Morphobank this afternoon

Cooperl: /* Meeting with Morphobank this afternoon */

2011-07-06T16:13:27Z

Meeting with Morphobank this afternoon

Cooperl: /* Meeting with Morphobank this afternoon */

2011-07-06T16:09:20Z

Meeting with Morphobank this afternoon

Cooperl: /* Meeting with Morphobank this afternoon */

2011-07-06T16:08:20Z

Meeting with Morphobank this afternoon

Rwalls: /* Upcoming meetings 2011: */

2011-07-06T14:30:47Z

Upcoming meetings 2011:

← Older revision		Revision as of 18:23, 22 July 2011
Line 11:		Line 11:


−	Acceptance of the minutes from the [[POC_Conf._Call_6-28-11]]? ''No changes, additions, or deletions.''	+	Acceptance of the minutes from the [[POC_Conf._Call_6-28-11]]? ''There were no changes, additions, or deletions.''

@@ Line 28: / Line 28: @@
 ''PO wants to develop a matrix of plant phenotype characters (character on Y axis, states on X axis), with ontologies integrated into character descriptions. Need tools to help people describe phenotypes. Should be useable by both taxonomists and people doing large-scale phenotype screens.''
-''There was some discussion of how this project relates to PO collaboration with FNA, and their need for plant-specific characters from PO and PATO.''
+''There was some discussion of how this project relates to PO collaboration with FNA, and their need for plant-specific characters from PO and PATO. Both FNA and taxonomic studies (like Morphobank normally deals with) have traditionally used free text definitions.''
 ''There was some discussion of working with PATO to incorporate new terms for plants. Georgios Gkoutos is doing the day-to-day operations of PATO. We need to work with him to make sure plants terms are represented correctly. He won't be at the ICBO meeting, but CM will be, and we could talk to him about it. BS also expressed concern about how large PATO is growing and the need for some modularization. We need to set up a meeting with Georgios.''

@@ Line 111: / Line 111: @@
 ''We looked at examples of leaves where the petiole is a phyllode, but there is lamina development (with leaflets) beyond the lamina. In this case, the phyllode only represents the petiole portion of the leaf. We need a term to describe this, as well as when the whole leaf develops as a phyllode. Revisit this next week.''
 ''The rest of these items were tabled for next week...''
 ===[https://sourceforge.net/tracker/?func=detail&aid=3165994&group_id=76834&atid=835555 banner, wing and keel]===

@@ Line 110: / Line 110: @@
 ''We looked at examples of leaves where the petiole is a phyllode, but there is lamina development (with leaflets) beyond the lamina. In this case, the phyllode only represents the petiole portion of the leaf. We need a term to describe this, as well as when the whole leaf develops as a phyllode. Revisit this next week.''
 ===[https://sourceforge.net/tracker/?func=detail&aid=3165994&group_id=76834&atid=835555 banner, wing and keel]===
@@ Line 146: / Line 148: @@
 Comment: The keel petals are usually larger than the adjacent wing petals. They are often partially fused to each other.
 Each petal is shaped like half a boat and projects toward the front of the flower.
 ===[https://sourceforge.net/tracker/?func=detail&aid=3165983&group_id=76834&atid=835555 bristle]===

← Older revision		Revision as of 16:16, 6 July 2011
Line 245:		Line 245:
	LC and PJ will present a [http://abstracts.aspb.org/pb2011/public/P21/P21013.html PO poster].		LC and PJ will present a [http://abstracts.aspb.org/pb2011/public/P21/P21013.html PO poster].

−	TAIR (Kate Dreher) is organizing an [[Plant_Biology_2011_Outreach_Booth ~~Outreach Booth~~]] and we are invited to take part. We are hosting the website.	+	TAIR (Kate Dreher) is organizing an [[Plant_Biology_2011_Outreach_Booth]] and we are invited to take part. We are hosting the website.

← Older revision		Revision as of 16:13, 6 July 2011
Line 38:		Line 38:

	''Action items:''		''Action items:''
		+
	''Set up meeting with Georgios Gkoutos to discuss PATO''		''Set up meeting with Georgios Gkoutos to discuss PATO''

@@ Line 28: / Line 28: @@
 ''PO wants to develop a matrix of plant phenotype characters (character on Y axis, states on X axis), with ontologies integrated into character descriptions. Need tools to help people describe phenotypes. Should be useable by both taxonomists and people doing large-scale phenotype screens.''
- ''There was some discussion of how this project relates to PO collaboration with FNA, and their need for plant-specific characters from PO and PATO. Both FNA and taxonomic studies like Morphobank normally deals with have traditionally used free text definitions.''
+''There was some discussion of how this project relates to PO collaboration with FNA, and their need for plant-specific characters from PO and PATO.''
 ''There was some discussion of working with PATO to incorporate new terms for plants. Georgios Gkoutos is doing the day-to-day operations of PATO. We need to work with him to make sure plants terms are represented correctly. He won't be at the ICBO meeting, but CM will be, and we could talk to him about it. BS also expressed concern about how large PATO is growing and the need for some modularization. We need to set up a meeting with Georgios.''
@@ Line 34: / Line 36: @@
 ''We can at least associate to PATO at a coarse level (e.g., to shape or size), even if we can't have the specific types of shape or size descriptors we need.''
-Action items:
+''All of our phenotype characters should have an xref to PATO. Upper-level PATO must be organism-neutral.''
 =Compliance with OBO Foundry guidelines=

@@ Line 217: / Line 217: @@
 Investigations, the Ontology for General Medical Sciences and the Plant Ontology"
-Link to program:  [[http://icbo.buffalo.edu/2011ProgramTemplate.pdf]]
+Link to program:  [http://icbo.buffalo.edu/2011ProgramTemplate.pdf]
 LC is co-organizing the workshop "From Fins to Limbs to Leaves: Facilitating anatomy ontology interoperability"
 along with Melissa Haendel, Chris Mungall, Alan Ruttenberg, David Osumi-Sutherland.
-Date:  July 27 8.30am-4pm '''Facilitating Anatomy Ontology Interoperability''
+Date:  July 27 8.30am-4pm '''Facilitating Anatomy Ontology Interoperability'''
@@ Line 232: / Line 232: @@
 Gramene and Plant Ontology are hosting a [[http://outreach.gramene.org/gramene-outreach/index.php/Main_Page Data Curation Workshop]] again, focusing on pathway curations.
-LC and PJ will present a [[http://abstracts.aspb.org/pb2011/public/P21/P21013.html PO poster].
+LC and PJ will present a [http://abstracts.aspb.org/pb2011/public/P21/P21013.html PO poster].
-TAIR (Kate Dreher) is organizing an [Plant_Biology_2011_Outreach_Booth Outreach Booth] and we are invited to take part.  We are hosting the website.
+TAIR (Kate Dreher) is organizing an [[Plant_Biology_2011_Outreach_Booth Outreach Booth]] and we are invited to take part.  We are hosting the website.