POC Conf. Call 6-14-10 - Revision history

Cooperl: /* c. tuber epidermis */

2010-06-17T16:24:07Z

c. tuber epidermis

Cooperl at 18:57, 16 June 2010

2010-06-16T18:57:03Z

Cooperl: /* c. tuber epidermis */

2010-06-16T18:50:54Z

c. tuber epidermis

Cooperl: /* c. tuber epidermis */

2010-06-16T18:49:20Z

c. tuber epidermis

Cooperl: /* Upcoming Conferences and Meetings: Updates: */

2010-06-16T18:29:43Z

Upcoming Conferences and Meetings: Updates:

Cooperl: /* c. tuber epidermis */

2010-06-16T18:28:11Z

c. tuber epidermis

Cooperl: /* b. tuber eye */

2010-06-16T18:27:52Z

b. tuber eye

Cooperl: /* c. tuber epidermis */

2010-06-16T18:27:11Z

c. tuber epidermis

Cooperl: /* c. tuber epidermis */

2010-06-16T18:26:48Z

c. tuber epidermis

Cooperl: /* c. tuber epidermis */

2010-06-16T18:25:02Z

c. tuber epidermis

← Older revision		Revision as of 16:24, 17 June 2010
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	Comment: The epidermis can be composed of one or more layers of cells.		Comment: The epidermis can be composed of one or more layers of cells.

−	''New definition of '''epidermis''': A portion of plant tissue composed of epidermal cells that develops from the protoderm and covers the surface of a plant structure. Comments: The epidermis can be composed of one or more layers of cells. In some species, the epidermis is replaced by periderm.''	+	''New definition of '''epidermis''': A portion of plant tissue composed of epidermal cells that develops from the protoderm and covers the surface of a plant structure. ''
		+	''Comments: The epidermis can be composed of one or more layers of cells. In some species, the epidermis is replaced by periderm.''

← Older revision		Revision as of 18:57, 16 June 2010
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−	'''8. Next meeting scheduled for ''' Next week- Weds June 23rd time: 9 am'''	+	'''8. Next meeting scheduled for ''' Next week- Weds June 23rd time: 10 am'''

@@ Line 151: / Line 151: @@
 ''Barry suggested that any term that has the word tissue in the name should have prefix 'portion of.' We agreed to try this, as there are a limited number of such terms. He also was concerned about terms like secretory tissue and transfusion tissue, that are based on function rather than structure or position. We will have to address those later.''
 Thus, the term 'ground tissue' goes back to being called 'portion of ground tissue'.
 ==Upcoming Conferences and Meetings: Updates:==

← Older revision		Revision as of 18:49, 16 June 2010
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	''Barry suggested that any term that has the word tissue in the name should have prefix 'portion of.' We agreed to try this, as there are a limited number of such terms. He also was concerned about terms like secretory tissue and transfusion tissue, that are based on function rather than structure or position. We will have to address those later.''		''Barry suggested that any term that has the word tissue in the name should have prefix 'portion of.' We agreed to try this, as there are a limited number of such terms. He also was concerned about terms like secretory tissue and transfusion tissue, that are based on function rather than structure or position. We will have to address those later.''
		+	Thus, the term 'ground tissue' goes back to being called 'portion of ground tissue'.

	==Upcoming Conferences and Meetings: Updates:==		==Upcoming Conferences and Meetings: Updates:==

← Older revision		Revision as of 18:29, 16 June 2010
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	*'''Bio-Ontologies 2010: Semantic Applications in Life Sciences.''' July 9th and 10th, 2010, Boston, Mass. Satellite Interest Group (SIG) meeting preceding the International Society for Computational Biology (ISCB). Laurel, Ramona are registered.		*'''Bio-Ontologies 2010: Semantic Applications in Life Sciences.''' July 9th and 10th, 2010, Boston, Mass. Satellite Interest Group (SIG) meeting preceding the International Society for Computational Biology (ISCB). Laurel, Ramona are registered.

−	Our one page write up[[http://wiki.plantontology.org:8080/index.php/File:Cooper_Walls_BioOntologies_%28LC_5-15-10%29.pdf]] has been selected for a 'flash update talk' along with the poster. We decided Ramona would take the lead on this presentation, since Laurel did the previous one..	+	Our one page write up[[http://wiki.plantontology.org:8080/index.php/File:Cooper_Walls_BioOntologies_%28LC_5-15-10%29.pdf]] has been selected for a 'flash update talk' along with the poster. We decided Ramona would take the lead on this presentation, since Laurel did the previous one.
		+
		+	''Ramona and Laurel will circulate the proposed presentation for the group to review.''

← Older revision		Revision as of 18:28, 16 June 2010
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	''Also discussed protoderm (should be is_a meristem, part_of apical meristem) and hypodermis (should be is_a ground tissue, part_of cortex).''		''Also discussed protoderm (should be is_a meristem, part_of apical meristem) and hypodermis (should be is_a ground tissue, part_of cortex).''

		+	''These terms and their definitions were accepted as amended and this tracker item can be closed.''

	''Barry suggested that any term that has the word tissue in the name should have prefix 'portion of.' We agreed to try this, as there are a limited number of such terms. He also was concerned about terms like secretory tissue and transfusion tissue, that are based on function rather than structure or position. We will have to address those later.''		''Barry suggested that any term that has the word tissue in the name should have prefix 'portion of.' We agreed to try this, as there are a limited number of such terms. He also was concerned about terms like secretory tissue and transfusion tissue, that are based on function rather than structure or position. We will have to address those later.''

← Older revision		Revision as of 18:27, 16 June 2010
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	''Need to add tuber bud as a synonym of tuber axillary vegetative bud.''		''Need to add tuber bud as a synonym of tuber axillary vegetative bud.''
		+
		+	''These terms and their definitions were accepted as amended and this tracker item can be closed.''

	===c. [https://sourceforge.net/tracker/?func=detail&aid=3005635&group_id=76834&atid=835555 tuber epidermis]===		===c. [https://sourceforge.net/tracker/?func=detail&aid=3005635&group_id=76834&atid=835555 tuber epidermis]===

@@ Line 86: / Line 86: @@
 ''From previous meeting: the skin of a potato is actually a periderm, but there are tubers (including young dicot tubers and monocots) that have an epidermis, so we will need both tuber epidermis and tuber periderm.''
 New terms to deal with tuber epidermis (see [http://dev.plantontology.org:8080/amigo/go.cgi?action=plus_node&depth=1&search_constraint=terms&query=PO:0006342&session_id=9310b1265408965 dev browser]):
 *'''Tuber periderm''' (PO:0025043): A periderm that is part of a tuber.

@@ Line 136: / Line 136: @@
 Comment: Replaces the epidermis in stems and roots, rarely in other organs
-''Periderm should not be a child of dermal tissue, but of ground tissue (since it develops from the ground meristem).
+''New definition of '''periderm''': The peripheral portion of ground tissue in a plant structure that is composed of phellogen, phellem, and phelloderm. Comment: May replace the epidermis in stems and roots, rarely in other organs. In some cases, the epidermis is retained after periderm development.''
@@ Line 148: / Line 147: @@
 ''Also discussed protoderm (should be is_a meristem, part_of apical meristem) and hypodermis (should be is_a ground tissue, part_of cortex).''
 ''Barry suggested that any term that has the word tissue in the name should have prefix 'portion of.' We agreed to try this, as there are a limited number of such terms. He also was concerned about terms like secretory tissue and transfusion tissue, that are based on function rather than structure or position. We will have to address those later.''

@@ Line 111: / Line 111: @@
 Proposed def: A portion of plant tissue that covers the surface of the plant.
 *[https://sourceforge.net/tracker/?func=detail&aid=3008011&group_id=76834&atid=835555 epidermis] (PO:0005679)
@@ Line 119: / Line 124: @@
 Comment: The epidermis can be composed of one or more layers of cells.
 *[https://sourceforge.net/tracker/?func=detail&aid=3008013&group_id=76834&atid=835555 periderm] (PO:0005046)
@@ Line 126: / Line 134: @@
 Proposed def: A portion of dermal tissue that is secondarily derived and composed of phellogen, phellem, and phelloderm.
-Comment: Replaces the epidermis in stems and roots, rarely in other organs.
+Comment: Replaces the epidermis in stems and roots, rarely in other organs
-''We accepted the new terms for tuber epidermis and tuber periderm. Need to add comments that mature potato skin is periderm, young potato skin is epidermis, and that epidermis is replaced by periderm in most dicot tubers.''
+''Periderm should not be a child of dermal tissue, but of ground tissue (since it develops from the ground meristem).
-''We will obsolete the term dermal tissue (with note to move annotations to epidermis).''
+New definition of '''periderm''': The peripheral portion of ground tissue in a plant structure that is composed of phellogen, phellem, and phelloderm. Comment: May replace the epidermis in stems and roots, rarely in other organs. In some cases, the epidermis is retained after periderm development.''
-''Periderm should not be a child of dermal tissue, but of ground tissue (since it develops from the ground meristem). New definition of '''periderm''': The periferral portion of ground tissue in a plant structure that is composed of phellogen, phellem, and phelloderm. Comment: May replace the epidermis in stems and roots, rarely in other organs. In some cases, the epidermis is retained after periderm development.''
+''We accepted the new terms for tuber epidermis and tuber periderm. Need to add comments that mature potato skin is periderm, young potato skin is epidermis, and that epidermis is replaced by periderm in most dicot tubers.''
 ''Barry suggested that we may want to use the relation periderm proceeded_by epidermis, but we decided that was too specific, since there are times when the epidermis remains after periderm development. We should try to think of other possible uses for proceeded_by in the PO.''
 ''Also discussed protoderm (should be is_a meristem, part_of apical meristem) and hypodermis (should be is_a ground tissue, part_of cortex).''