POC Conf. Call 6-11-13 - Revision history

Cooperl at 00:13, 18 June 2013

2013-06-18T00:13:25Z

Cooperl: /* Proposed Solution: */

2013-06-18T00:09:25Z

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2013-06-18T00:08:38Z

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2013-06-18T00:08:19Z

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2013-06-18T00:05:35Z

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Cooperl: /* Proposed Solution: */

2013-06-18T00:04:08Z

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Cooperl: /* Proposed Solution: */

2013-06-17T23:57:46Z

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2013-06-17T23:43:45Z

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2013-06-17T23:42:44Z

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Cooperl: /* New Look to the SourceForge Tracker */

2013-06-11T23:46:29Z

New Look to the SourceForge Tracker

← Older revision		Revision as of 00:13, 18 June 2013
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	Absent: ''Barry Smith''		Absent: ''Barry Smith''
−
−	~~Streaming recording link: https://ontology.webex.com/ontology/ldr.php?AT=pb&SP=MC&rID=75666242&rKey=f1796f02352bf1de~~
−
−	~~Download recording link: https://ontology.webex.com/ontology/lsr.php?AT=dw&SP=MC&rID=75666242&rKey=9854787b729d5256~~

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 This sound probably be handled in a similar way- make it a portion of vascular tissue, part of xylem.
 ''We decided that this term can stay where it is, since the protoxylem and metaxylem are remaining
 =Other Items for discussion=

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 Revised definition of metaxylem and protoxylem:
-*metaxylem (PO:0000372):A primary xylem (PO:0005849) tissue that has as part metaxylem tracheary elements (PO:0025576) embedded in parenchyma (PO:0005421) tissue, may contain xylem fiber cells (PO:0000274) and develops after elongation has completed.
+*metaxylem (PO:0000372): A primary xylem (PO:0005849) tissue that has as part metaxylem tracheary elements (PO:0025576) embedded in parenchyma (PO:0005421) tissue, may contain xylem fiber cells (PO:0000274) and develops after elongation has completed.
 Comment: Metaxylem develops after the protoxylem (PO:0000272) and has larger elements than the protoxylem.

← Older revision		Revision as of 00:08, 18 June 2013
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	Comment:In a given portion of primary xylem (PO:0005849), metaxylem tracheary elements are generally larger in size, greater in number and have more secondary wall material than protoxylem tracheary elements (PO:0025575).		Comment:In a given portion of primary xylem (PO:0005849), metaxylem tracheary elements are generally larger in size, greater in number and have more secondary wall material than protoxylem tracheary elements (PO:0025575).

−	''~~Creating~~ new metaxylem/protoxylem tracheary element terms as children of primary xylem tracheary element ~~and making a~~ part_of ~~relation~~ between protoxylem tracheary element and protoxylem, and between metaxylem tracheary element and metaxylem.''	+	''Created new metaxylem/protoxylem tracheary element terms (see above) as children of primary xylem tracheary element. Made part_of relations between protoxylem tracheary element (PO:0025575) and protoxylem (PO:0000272); and between metaxylem tracheary element (PO:0025576) and metaxylem (PO:0000372).''

← Older revision		Revision as of 00:05, 18 June 2013
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	[[File:Revised xylem terms.png]]		[[File:Revised xylem terms.png]]
		+
		+	Revised primary Xylem heirarchy

← Older revision		Revision as of 00:04, 18 June 2013
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−	[[File:~~primary~~ xylem ~~TEs~~.png]]	+	[[File:Revised xylem terms.png]]

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 Revised definition of metaxylem and protoxylem:
-*metaxylem (PO:0000372):A portion of primary xylem (PO:0005849) tissue that has as part metaxylem tracheary elements (PO:0025576) embedded in parenchyma (PO:0005421) tissue, may contain xylem fiber cells (PO:0000274) and develops after elongation has completed.
+*metaxylem (PO:0000372):A primary xylem (PO:0005849) tissue that has as part metaxylem tracheary elements (PO:0025576) embedded in parenchyma (PO:0005421) tissue, may contain xylem fiber cells (PO:0000274) and develops after elongation has completed.
 Comment: Metaxylem develops after the protoxylem (PO:0000272) and has larger elements than the protoxylem.
-*protoxylem (PO:0000272): A portion of primary xylem (PO:0000272) tissue that has as part protoxylem tracheary elements (PO:0025575) embedded in parenchyma (PO:0005421) tissue.
+*protoxylem (PO:0000272): A primary xylem (PO:0000272) tissue that has as part protoxylem tracheary elements (PO:0025575) embedded in parenchyma (PO:0005421) tissue.
 Comment: Develops while the vascular tissue (PO:0009015) is still elongating. When protoxylem tracheary elements (PO:0025575) are destroyed they may become obliterated by surrounding parenchyma cells (PO:0000074). Protoxylem has smaller elements than the metaxylem (PO:0000372).
-* primary xylem tracheary element (PO:0025444): A tracheary element (PO:0000290) that is part of a portion of primary xylem tissue (PO:0005849).
+* primary xylem tracheary element (PO:0025444): A tracheary element (PO:0000290) that is part of a primary xylem tissue (PO:0005849).
 ** protoxylem tracheary element (new PO:0025575): A primary xylem tracheary element (PO:0025444) with predominately annular or helical secondary wall thickening that are the first formed tracheary elements (PO:0000290) at a particular location.

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 ==Proposed Solution:==
 * Made protoxylem and metaxylem children of portion of vascular tissue and part_of primary xylem- ''this was rejected''
-* Could not make primary xylem tracheary element part of the protoxylem and metaxylem, created a cycle
+* Could not make primary xylem tracheary element part of the protoxylem and metaxylem, created a cycle, so we created two new terms to describe the tracheary elements in the primary xylem ''this is ok, accepted''
-* Created two new terms to describe the tracheary elements in the primary xylem ''this is ok, acepted''
+* Revised the definitions of protoxylem and metaxylem- incorporating the reference to the new terms ''this is ok, accepted''
 Link to tracker:  [https://sourceforge.net/p/obo/plant-ontology-po-term-requests/440/ primary xylem tracheary element] terms:

← Older revision		Revision as of 23:46, 11 June 2013
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	** If you are opening new trackers the groups are now called "milestones"		** If you are opening new trackers the groups are now called "milestones"
		+
		+	** You can now reply to (and follow) specific comments

	** We are sorting out a few administrative details such as how to reopen or close and assign trackers. It appears that the user permissions have changed. Currently LC is a developer- probably should be an admin in order to manage trackers. Need to add Brian as developer.		** We are sorting out a few administrative details such as how to reopen or close and assign trackers. It appears that the user permissions have changed. Currently LC is a developer- probably should be an admin in order to manage trackers. Need to add Brian as developer.