POC Conf. Call 5-4-10 - Revision history

Cooperl at 21:18, 4 May 2010

2010-05-04T21:18:07Z

2010-05-04T21:17:28Z

2010-05-04T21:16:25Z

2010-05-04T21:10:13Z

2010-05-04T20:00:31Z

2010-05-04T19:51:55Z

2010-05-04T18:47:54Z

2010-05-04T18:47:09Z

2010-05-04T18:46:07Z

2010-05-04T18:43:55Z

← Older revision		Revision as of 21:18, 4 May 2010
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	Acceptance of the minutes from last weeks meeting? All in favor?		Acceptance of the minutes from last weeks meeting? All in favor?
−		+	''There were no additions, deletions or changes to last weeks minutes.''

@@ Line 146: / Line 146: @@
-'''* Bio-Ontologies 2010: Semantic Applications in Life Sciences.''' July 9th and 10th, 2010, Boston, Mass. Satellite Interest Group (SIG) meeting preceding the International Society for Computational Biology (ISCB). Laurel, Ramona may be going.
+'''* Bio-Ontologies 2010: Semantic Applications in Life Sciences.''' July 9th and 10th, 2010, Boston, Mass. Satellite Interest Group (SIG) meeting preceding the International Society for Computational Biology (ISCB). Laurel, Ramona are registered.
 -Flash updates, up to 1 page: (short talks (5 min) giving the salient new developments on existing public ontologies) -Poster abstracts, up to 1 page (posters will be up for 2 days, with at least 1 poster session) Poster authors can also do a flash update.
-Laurel submitted the 1 pager on Friday April 16th to Bio-Ontologies meeting for a poster presentation and possibly a short flash update talk. We will be notified by May 7th if we are doing a flash update. Registration deadline May 28th, $325.
+Laurel submitted the 1 pager on Friday April 16th to Bio-Ontologies meeting for a poster presentation and possibly a short flash update talk. We will be notified by May 7th if we are doing a flash update.

@@ Line 45: / Line 45: @@
-''POC conf call: Proposed new def'n:
+''POC conf call: Proposed new def'n:''
-A collective plant structure that contains a post-fertilization stage gynoecium and any other structures of the flower that mature with it.
+''A collective plant structure that contains a post-fertilization stage gynoecium and any other structures of the flower that mature with it.''
-(Comment: exception parthenocarpy or other-hormone induced condition)''
+''(Comment: exception parthenocarpy or other hormone-induced condition)''
 ''Note that we may need to define parthenocarpy at some point (or put in a dbx ref for it).''
@@ Line 78: / Line 78: @@
-''Those present agreed that it might be better to have embryo is_a sporphyte, which makes it a whole plant through transitivity.''
+''Parentage: Those present agreed that it might be better to have embryo is_a sporphyte, which makes it a whole plant through transitivity.  Usually develops_from zygote''
 ''Also agreed that the phrase 'before the period of rapid growth' is too vague.''

← Older revision		Revision as of 21:10, 4 May 2010
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	''Also agreed that the phrase 'before the period of rapid growth' is too vague.''		''Also agreed that the phrase 'before the period of rapid growth' is too vague.''
		+
		+

@@ Line 78: / Line 78: @@
-''Those present agreed that it might be better to have embryo is_a sporphyte, which makes it a whole plant through transitivity).''
+''Those present agreed that it might be better to have embryo is_a sporphyte, which makes it a whole plant through transitivity.''
 ''Also agreed that the phrase 'before the period of rapid growth' is too vague.''
@@ Line 114: / Line 114: @@
 - Should we aim for complete redundancy between cells in PO and plant cells in CL?
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-'''8. Next meeting scheduled for Tuesday May 11th at 10am.'''
+'''8. Next meeting scheduled for Tuesday May 11th at 10am PDT.'''

@@ Line 28: / Line 28: @@
 This def'n avoids the use of the term 'stem' here. 'Whorl' and 'floral whorl' (a term used in GO) are narrow synonyms.
@@ Line 46: / Line 48: @@
 A collective plant structure that contains a post-fertilization stage gynoecium and any other structures of the flower that mature with it.
 (Comment: exception parthenocarpy or other-hormone induced condition)''
@@ Line 74: / Line 78: @@

@@ Line 5: / Line 5: @@
 ''In attendance: POC members: Laurel Cooper (OSU), Alejandra Gandolfo, (Cornell University), Ramona Walls (NYBG)''
-''Collaborators: Rex Nelson-SOYbase, USDA-ARS, Ames, Iowa, Rosemary Shrestha- Generation Challenge Program, CIMMYT, Mexico,
+Collaborators: Rex Nelson-SOYbase, USDA-ARS, Ames, Iowa, Rosemary Shrestha- Generation Challenge Program, CIMMYT, Mexico,
-''
 ''Absent: Pankaj Jaiswal (OSU),Dennis Stevenson (NYBG), Barry Smith (University at Buffalo, NY), Chris Mungall (Lawrence Berkeley National Lab)''
@@ Line 15: / Line 15: @@
 Acceptance of the minutes from last weeks meeting? All in favor?
@@ Line 30: / Line 28: @@
 This def'n avoids the use of the term 'stem' here. 'Whorl' and 'floral whorl' (a term used in GO) are narrow synonyms.
@@ Line 47: / Line 42: @@
 (CPS: a proper part of a plant and is composed of two or more organs and any associated portions of plant tissue).
 ''POC conf call: Proposed new def'n:
 A collective plant structure that contains a post-fertilization stage gynoecium and any other structures of the flower that mature with it.
 (Comment: exception parthenocarpy or other-hormone induced condition)''
@@ Line 77: / Line 73: @@
 (3) embryo contained_in archegonium (works for land plants, not charophytes (doi: 10.1111/j.1469-8137.2009.03054.x)

← Older revision		Revision as of 18:47, 4 May 2010
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	(3) embryo contained_in archegonium (works for land plants, not charophytes (doi: 10.1111/j.1469-8137.2009.03054.x)		(3) embryo contained_in archegonium (works for land plants, not charophytes (doi: 10.1111/j.1469-8137.2009.03054.x)

		+	''POC Conf call: A young sporophyte before the period of rapid growth.

		+	Parentage: is_a sporophyte (making it is_a whole plant)
		+	usually develops_from zygote
		+
		+	We should try to find a physical form/state that demarcates the end of
		+	the embryo, instead of the vague "before ..rapid growth". In seed plants it
		+	could be germination. Can we define an equivalent state in non-seed plants?''

← Older revision		Revision as of 18:46, 4 May 2010
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	(CPS: a proper part of a plant and is composed of two or more organs and any associated portions of plant tissue).		(CPS: a proper part of a plant and is composed of two or more organs and any associated portions of plant tissue).

		+	''There was considerable discussion about the terms mature and whether or not fruits occur in only angiosperms.''
		+
		+	''POC conf call: Proposed new def'n:
		+	A collective plant structure that contains a post-fertilization stage gynoecium and any other structures of the flower that mature with it.
		+	(Comment: exception parthenocarpy or other-hormone induced condition)''

← Older revision		Revision as of 18:43, 4 May 2010
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	This def'n avoids the use of the term 'stem' here. 'Whorl' and 'floral whorl' (a term used in GO) are narrow synonyms.		This def'n avoids the use of the term 'stem' here. 'Whorl' and 'floral whorl' (a term used in GO) are narrow synonyms.
		+
		+	''Everyone agreed that this definition was better and the item was accepted and can be closed on SF''