POC Conf. Call 5-22-12 - Revision history

Cooperl: /* Anatomy Ontology Course at NESCent, July 30th- Aug 3rd, 2012 */

2012-05-24T18:15:27Z

Anatomy Ontology Course at NESCent, July 30th- Aug 3rd, 2012

2012-05-23T20:55:48Z

PO-CARO

2012-05-23T15:50:34Z

Crop Ontology Workshop

2012-05-23T15:48:58Z

MOSS 2012 and The 3rd International Symposium on Molecular Systematics of Bryophytes

2012-05-23T14:04:11Z

ovule

2012-05-23T13:49:05Z

ovule

2012-05-23T13:48:45Z

ovule

2012-05-23T13:33:07Z

ovule

2012-05-23T13:29:07Z

ovule

2012-05-23T13:12:11Z

Root primordia and roots

← Older revision		Revision as of 18:15, 24 May 2012
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	Application deadline is April 4th, 2012 (extended through mid-April)		Application deadline is April 4th, 2012 (extended through mid-April)
		+
		+	=Next meeting scheduled for Tuesday, June 5, 2012 at 10am PDT/1pm EDT=
		+	See: [[POC_Conf._Call_6-5-12]]

← Older revision		Revision as of 20:55, 23 May 2012
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	=PO-CARO=		=PO-CARO=
		+	''Post-poned to future meeting. Some of this will be part of the discussion of how to deal with seeds, etc.''
		+
	The Common Anatomy Reference Ontology (CARO) is undergoing a major revision as [http://code.google.com/p/caro2/ CARO 2].		The Common Anatomy Reference Ontology (CARO) is undergoing a major revision as [http://code.google.com/p/caro2/ CARO 2].

← Older revision		Revision as of 15:50, 23 May 2012
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	The focus of the workshop will be on mostly development stages and traits for the crop plants		The focus of the workshop will be on mostly development stages and traits for the crop plants
−
−	~~Ruth Bastow is contacting some of the interested people to see which of these dates work best.~~

	==[http://www.botanyconference.org/ Botany 2012]==		==[http://www.botanyconference.org/ Botany 2012]==

← Older revision		Revision as of 15:48, 23 May 2012
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	==[http://www.regonline.com/builder/site/Default.aspx?EventID=1015479 MOSS 2012 and The 3rd International Symposium on Molecular Systematics of Bryophytes]==		==[http://www.regonline.com/builder/site/Default.aspx?EventID=1015479 MOSS 2012 and The 3rd International Symposium on Molecular Systematics of Bryophytes]==

		+	Thursday, June 14, 2012 - Friday, June 22, 2012

		+	The New York Botanical Garden

	Attendees have the option of registering for MOSS 2102 ($225), the Symposium on Molecular Systematics of Bryophytes ($225) or both ($400).		Attendees have the option of registering for MOSS 2102 ($225), the Symposium on Molecular Systematics of Bryophytes ($225) or both ($400).

@@ Line 124: / Line 124: @@
 ''BS: A is located_in B means either: A is a part of B  and is inside B, or it is contained in B (like a fetus). Located_in and part of or just located_in.''
-''embryo sac is only in the angi0sperms, in gymnosperms the megagametophyte is in the archegonium''
+''embryo sac is only in the angiosperms, in gymnosperms the megagametophyte is in the archegonium''
 Made funicle (PO:0020006) part of ovule.

← Older revision		Revision as of 13:48, 23 May 2012
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−	Antiraphe, chalaza, integument, nucellus, and raphe ''and funicle'' are part_of ovule. Will need to add comment to each of these saying: "If you are annotating to this structure for an angiosperm, please add an additional annotation to ~~ovarian~~ ovule (PO:id). If you are annotating to this structure for an gymnosperm, please add an additional annotation to ovuliferous scale ovule (PO:0025491)." --''okay''	+	Antiraphe, chalaza, integument, nucellus, and raphe ''and funicle'' are part_of ovule. Will need to add comment to each of these saying: "If you are annotating to this structure for an angiosperm, please add an additional annotation to plant ovary ovule (PO:0025490). If you are annotating to this structure for an gymnosperm, please add an additional annotation to ovuliferous scale ovule (PO:0025491)." --''okay''

	==Questions about the PO tuber terms==		==Questions about the PO tuber terms==

← Older revision		Revision as of 13:33, 23 May 2012
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	comment: Found in angiosperms.		comment: Found in angiosperms.

−	''Accepted proposed def'ns; but suggested we should use "plant ~~ovule", "plant ovary~~ ovule", "plant ovary ovule" and similarly, "plant ovary"''	+	''Accepted proposed def'ns; but suggested we should use "plant ovule", "plant ovary ovule" and similarly, "plant ovary"''

← Older revision		Revision as of 13:29, 23 May 2012
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	''Comment should say: should be '''in conifers''', not gymnosperms, as Gingko have a naked ovule, ovary has_part ovule ''		''Comment should say: should be '''in conifers''', not gymnosperms, as Gingko have a naked ovule, ovary has_part ovule ''

−	''RW: ~~If we add~~ ovary has_part ovule, ~~it will probably cause a cycle~~ with ovarian ovule ~~part of~~ ovary.''	+	''RW: It would be more correct to say ovary has_part ovarian ovule, but that would conflict with the relation ovarian ovule part_of ovary.''

@@ Line 145: / Line 145: @@
 This is consistent with the definition of lateral root suggested by Rich Zobel (A root developing from a parent root.) He also suggested we add a new term called "non-pericyclic lateral root" (RZ's def.: A lateral root that does not arise from pericycle tissues.), as a subtype of lateral root. If we add this term, we should add the sibling term "pericyclic lateral root" (A lateral root that develops from a root primordium that is part of a pericycle.).
 ===[https://sourceforge.net/tracker/index.php?func=detail&aid=3473464&group_id=76834&atid=835555 root anlagen]===
@@ Line 153: / Line 156: @@
 Comment: Only detectable by gene expression, not morphology. May arise in a pericycle  (PO:0006203), as for lateral roots in most seed plants, an endodermis (PO:0000252), as for lateral roots in ferns, or from parenchyma cells (PO:0000074) that are part a shoot axis (PO:0025029), in the case of a basal root  (PO:0025002) or shoot-borne root (PO:0000042).
 ===[https://sourceforge.net/tracker/?func=detail&aid=3522014&group_id=76834&atid=835555 root primordium]===
@@ Line 161: / Line 166: @@
 ref.: Steves and Sussex, ISBN:0521288959, POC:curators
 added root primordium develops from root anlagen (PO:0025433).
@@ Line 174: / Line 181: @@
 added basal root develops_from basal root primordium
@@ Line 183: / Line 192: @@
 added shoot-borne root develops_from shoot-borne root primordium