POC Conf. Call 4-9-13 - Revision history

Cooperl: /* Probably need to look at the corresponding stage terms: anther development stage (PO:0001004) */

2013-06-01T14:34:44Z

Probably need to look at the corresponding stage terms: anther development stage (PO:0001004)

Cooperl: /* Probably need to look at the corresponding stage terms: anther development stage (PO:0001004) */

2013-06-01T14:32:59Z

Probably need to look at the corresponding stage terms: anther development stage (PO:0001004)

Cooperl: /* Probably need to look at the corresponding stage terms: anther development stage (PO:0001004) */

2013-06-01T14:32:10Z

Probably need to look at the corresponding stage terms: anther development stage (PO:0001004)

Cooperl: /* Probably need to look at the corresponding stage terms: anther development stage (PO:0001004) */

2013-06-01T14:31:31Z

Probably need to look at the corresponding stage terms: anther development stage (PO:0001004)

Cooperl: /* Suggested child terms: */

2013-05-24T00:22:54Z

Suggested child terms:

Cooperl: /* xylem sap */

2013-05-23T23:56:50Z

xylem sap

Cooperl: /* xylem sap */

2013-05-23T23:56:05Z

xylem sap

Cooperl: /* xylem sap */

2013-05-23T23:55:14Z

xylem sap

Cooperl: /* Suggested child terms: */

2013-05-23T23:54:46Z

Suggested child terms:

Cooperl: /* xylem sap */

2013-05-23T23:13:41Z

xylem sap

@@ Line 56: / Line 56: @@
 Niu N, Liang W, Yang X, Jin W, Wilson ZA, Hu J, Zhang D. 2013. EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice. [http://www.nature.com.ezproxy.proxy.library.oregonstate.edu/ncomms/journal/v4/n2/full/ncomms2396.html abstract] Nat Commun 4, 1445.
-==Probably need to look at the corresponding stage terms: [https://sourceforge.net/tracker/?func=detail&aid=3613820&group_id=76834&atid=835555 anther development stage (PO:0001004)]==
+==Corresponding stage terms: [https://sourceforge.net/tracker/?func=detail&aid=3613820&group_id=76834&atid=835555 anther development stage (PO:0001004)]==
 * '''E tapetum degeneration initiated stage (PO:0001032):''' Stage during which degeneration of the tapetum is initiated, as the deposition on the surface of the microspore primexine proceeds.

@@ Line 61: / Line 61: @@
 ''Although all the tapetal tissues will undergo degeneration, this term refers specifically to anther wall taptum.''
-New name and def'n: ''E 'anther wall' tapetum degeneration initiated stage  (PO:0001032): An anther development stage during which degeneration of the anther wall tapetum (PO:0009071) is initiated, as the deposition on the surface of the microspore (PO:0020048) primexine proceeds.''
+'''Revised name and def'n: E 'anther wall' tapetum degeneration initiated stage  (PO:0001032):''' An anther development stage during which degeneration of the anther wall tapetum (PO:0009071) is initiated, as the deposition on the surface of the microspore (PO:0020048) primexine proceeds.''
 ''done''

@@ Line 58: / Line 58: @@
 ==Probably need to look at the corresponding stage terms: [https://sourceforge.net/tracker/?func=detail&aid=3613820&group_id=76834&atid=835555 anther development stage (PO:0001004)]==
-** E tapetum degeneration initiated stage (PO:0001032): Stage during which degeneration of the tapetum is initiated, as the deposition on the surface of the microspore primexine proceeds.
+* '''E tapetum degeneration initiated stage (PO:0001032):''' Stage during which degeneration of the tapetum is initiated, as the deposition on the surface of the microspore primexine proceeds.
 ''Although all the tapetal tissues will undergo degeneration, this term refers specifically to anther wall taptum.''
-revised name and definition of E tapetum degeneration initiated stage (PO:0001032):
+revised name and definition of: '''E tapetum degeneration initiated stage (PO:0001032):'''
 New name and def'n: ''E 'anther wall' tapetum degeneration initiated stage  (PO:0001032): An anther development stage during which degeneration of the anther wall tapetum (PO:0009071) is initiated, as the deposition on the surface of the microspore (PO:0020048) primexine proceeds.''

@@ Line 64: / Line 64: @@
 revised name and definition of E tapetum degeneration initiated stage (PO:0001032):
-New name and def'n: E 'anther wall' tapetum degeneration initiated stage  (PO:0001032): An anther development stage during which degeneration of the anther wall tapetum (PO:0009071) is initiated, as the deposition on the surface of the microspore (PO:0020048) primexine proceeds.
+New name and def'n: ''E 'anther wall' tapetum degeneration initiated stage  (PO:0001032): An anther development stage during which degeneration of the anther wall tapetum (PO:0009071) is initiated, as the deposition on the surface of the microspore (PO:0020048) primexine proceeds.''
 Blackmore S, Wortley AH, Skvarla JJ, Rowley JR (2007) Pollen wall development in flowering plants. New Phytologist 174: 483–498

@@ Line 130: / Line 130: @@
 ===Suggested child terms:===
-* We will need to have a root xylem sap and shoot xylem sap as they are different.  Please add 4 more terms to be more specific
+* PJ: We will need to have a root xylem sap and shoot xylem sap as they are different.  Please add 4 more terms to be more specific
 The reason xylem/phloem sap contents from root and shoot may differ.
@@ Line 138: / Line 138: @@
 **root system xylem sap
 *phloem sap (new PO:0025539):

@@ Line 91: / Line 91: @@
 Existing terms in GO:
 [http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0048046 apoplast (GO:0048046)]: The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it.
@@ Line 97: / Line 101: @@
 ''This definition needs to be modified to be similar to the one for symplast.  Lots of this should go in the comment.''
 See: [http://upload.wikimedia.org/wikipedia/commons/d/da/Apoplast_and_symplast_pathways.gif Link to diagram Apoplast_and_symplast_pathways]

@@ Line 83: / Line 83: @@
 Revised definition:
-''A portion of plant substance (PO:0025161) that is an aqueous solution, that can be transported through the apoplast or symplast. Use GO terms for the process terms ''
+''A portion of plant substance (PO:0025161) that is an aqueous solution, that can be transported through the apoplast or symplast.''
 ''Or better: A portion of plant substance (PO:0025161) that is an aqueous solution, that can participate in apoplastic transport (new GO term) or symplastic transport (new GO term).''

@@ Line 81: / Line 81: @@
 Comment: plant sap should not be confused with latex or resins.
-Alternatives:
+Revised definition:
 ''A portion of plant substance (PO:0025161) that is an aqueous solution, that can be transported through the apoplast or symplast. Use GO terms for the process terms ''

@@ Line 119: / Line 119: @@
 ''Capture that in a comment: ''
 '''New term: xylem sap (new PO:0025539):''' A plant sap (PO:0025538) that is an aqueous solution which may contain mineral elements, nutrients, and plant hormones, and is transported from the root system (PO:0025025) toward the leaves through the tracheary elements (PO:0000290) of the xylem.
@@ Line 132: / Line 127: @@
 *xylem sap (new PO:0025539)

← Older revision		Revision as of 23:13, 23 May 2013
Line 85:		Line 85:
	''A portion of plant substance (PO:0025161) that is an aqueous solution, that can be transported through the apoplast or symplast. Use GO terms for the process terms ''		''A portion of plant substance (PO:0025161) that is an aqueous solution, that can be transported through the apoplast or symplast. Use GO terms for the process terms ''

−	''Or better: A portion of plant substance (PO:0025161) that is an aqueous solution, that participate in apoplastic transport (new GO term) or symplastic transport (new GO term).''	+	''Or better: A portion of plant substance (PO:0025161) that is an aqueous solution, that can participate in apoplastic transport (new GO term) or symplastic transport (new GO term).''