POC Conf. Call 4-20-10 - Revision history

Cooperl at 16:43, 23 April 2010

2010-04-23T16:43:11Z

Cooperl at 16:41, 23 April 2010

2010-04-23T16:41:43Z

Cooperl at 20:28, 22 April 2010

2010-04-22T20:28:31Z

Rwalls at 17:46, 22 April 2010

2010-04-22T17:46:19Z

Rwalls at 17:45, 22 April 2010

2010-04-22T17:45:33Z

Rwalls at 13:50, 21 April 2010

2010-04-21T13:50:35Z

Rwalls: added attendance

2010-04-21T13:29:55Z

added attendance

Rwalls at 11:40, 21 April 2010

2010-04-21T11:40:16Z

Rwalls at 11:38, 21 April 2010

2010-04-21T11:38:31Z

Rwalls at 11:37, 21 April 2010

2010-04-21T11:37:53Z

← Older revision		Revision as of 16:43, 23 April 2010
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−	5. Next meeting scheduled for Tuesday April 27th at 10am.	+	'''5. Next meeting scheduled for Tuesday April 27th at 10am.'''

← Older revision		Revision as of 16:41, 23 April 2010
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−	''Alejandra said she talked to the organizers, and we only need to submit 2 or 3 potential speakers. The ~~othe~~	+	''Alejandra said she talked to the organizers, and we only need to submit 2 or 3 potential speakers. The others can be selected from the abstracts submitted to the meeting. Laurel and Ramona are happy to be organizers and are interested in attending if the funding is available. Pankaj will check with NSF to see if we can use travel funds for an international meeting.''
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		+	* Latin American Congress of Botany (http://www.botanica-alb.org/X_Congreso/index.php). La Serena, Chile, October 4-10; MAG: "I am not sure about due dates for this one due to the earthquake".
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		+	from 3-23-10: Dennis is attending LACB. We will consider having a presentation at this meeting. Alejandra will not be able to attend.
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		+	* Annotation workshops to be held at NYBG in fall 2010. Date TBD. Will invite outside experts, scientists, students and postdocs.
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		+	5. Next meeting scheduled for Tuesday April 27th at 10am.

@@ Line 152: / Line 152: @@
-'''* American Society of Plant Biology (ASPB) July 31-Aug 4th 2010, Montreal, Quebec, Canada.''' Laurel, Pankaj going, mini symposium presentation. Abstract submitted 3/12/10.
+'''* American Society of Plant Biology (ASPB) July 31-Aug 4th 2010, Montreal, Quebec, Canada.''' Laurel, Pankaj going, PO Poster presentation. Abstract submitted 3/12/10 and workshop.
 Laurel is looking into the possibility of hosting a booth with other database groups. SGN and maizeGDB are interested and she will check with TAIR and Gramene. The estimated costs are $1600 for the plain booth (no carpet, electricity or tables). This could be shared or PJ said POC could host it.
@@ Line 158: / Line 158: @@
 We should prepare a brochure to distribute, similar to the one Gramene has.
-Annotation workshop with Gramene has been tentatively approved for Sunday Aug 1, 8am-12pm.  more details TBA
+Annotation workshop with Gramene is scheduled for Saturday July 31, 8am-12pm.  more details TBA
 * '''International Botanical Congress (IBC2011). July 23rd-30th 2011, Melbourne, Australia.''' Important dates (http://www.ibc2011.com/Dates.htm):
@@ Line 172: / Line 172: @@
 Dennis is presenting in another symposium, but is not an organizer, so can organize an ontology symposium but not present. Some discussion of who presenters should be --  maybe Pankaj, Laurel and Ramona, Barry or Chris, someone from another plant-based ontology - perhaps Rex or Rosemary?
+''Alejandra said she talked to the organizers, and we only need to submit 2 or 3 potential speakers. The othe

@@ Line 30: / Line 30: @@
-''We decided that the term aggregation was not good, because it could be confused with other usages, like aggregations of cells in tissue culture or aggregate fruits. Tried the term phyllome arrangement, then at the end of the meeting, went with the term phyllome structure. After the meeting, Pankaj and Laurel proposed the terms '''collective phyllome structure''' to replace whorled phyllome structure and collective tepal structure to replace whorled tepal structure.''
+''We decided that the term aggregation was not good, because it could be confused with other usages, like aggregations of cells in tissue culture or aggregate fruits. Tried the term phyllome arrangement, then at the end of the meeting, went with the term phyllome structure. After the meeting, Pankaj and Laurel proposed the terms '''collective phyllome structure''' to replace whorled phyllome structure and '''collective tepal structure''' to replace whorled tepal structure.''
 ''There was continued discussion about whorls versus rosettes, and whether or not we needed separate terms for each type of structure. In the end there was a consensus that we needed an umbrella term that could encompass both types of structures.''
@@ Line 76: / Line 76: @@
-''After the meeting, Pankaj and Laurel proposed the term 'collective tepal structure to replace whorled tepal structure.''
+''After the meeting, Pankaj and Laurel proposed the term collective tepal structure to replace whorled tepal structure.''

@@ Line 30: / Line 30: @@
-''We decided that the term aggregation was not good, because it could be confused with other usages, like aggregations of cells in tissue culture or aggregate fruits. Tried the term phyllome arrangement, then at the end of the meeting, went with the term phyllome structure. After the meeting, Pankaj and Laurel proposed the term '''collective phyllome structure''' to replace whorled phyllome structure.''
+''We decided that the term aggregation was not good, because it could be confused with other usages, like aggregations of cells in tissue culture or aggregate fruits. Tried the term phyllome arrangement, then at the end of the meeting, went with the term phyllome structure. After the meeting, Pankaj and Laurel proposed the terms '''collective phyllome structure''' to replace whorled phyllome structure and collective tepal structure to replace whorled tepal structure.''
 ''There was continued discussion about whorls versus rosettes, and whether or not we needed separate terms for each type of structure. In the end there was a consensus that we needed an umbrella term that could encompass both types of structures.''
@@ Line 43: / Line 43: @@
-B. Children of phyllome aggregation:  See SF tracker item [https://sourceforge.net/tracker/func=detail&aid=2988258&group_id=76834&atid=835555/ new defintions for children of whorled phyllome structure]and items C and D below.
+B. Children of phyllome aggregation:  See SF tracker item [http://sourceforge.net/tracker/?func=detail&aid=2988258&group_id=76834&atid=835555/ new defintions for children of whorled phyllome structure] and items C and D below.
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 This could be replaced by '''tepal aggregation:''' A phyllome aggregation composed of four or more tepals either in a rosette or in two or more whorled arrangements.

← Older revision		Revision as of 13:50, 21 April 2010
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−	''Barry will be in France this week and can't attend. Pankaj suggested we plan on meeting for two days. Dennis has to be back in NYC early on July 1st, to we will try to meet June 29th and 30th. Ramona will request that her talk be scheduled for the 27th or 28th.''	+	''Barry will be in France this week and can't attend. Pankaj suggested we plan on meeting for two days. Dennis has to be back in NYC early on July 1st, so we will try to meet June 29th and 30th. Ramona will request that her talk be scheduled for the 27th or 28th.''

← Older revision		Revision as of 13:29, 21 April 2010
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	''Minutes are in italics below each agenda item.''		''Minutes are in italics below each agenda item.''
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		+	''In attendance: POC members: Laurel Cooper (OSU), Pankaj Jaiswal (OSU), Barry Smith (University at Buffalo, NY), Alejandra Gandolfo, (Cornell University), Ramona Walls(NYBG), Dennis Stevenson (NYBG)''
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		+	''Collaborators: Rex Nelson-Soybase, USDA-ARS, Ames, Iowa''
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		+	''Absent: Chris Mungall (Lawrence Berkeley National Lab)''

	== Agenda: ==		== Agenda: ==

@@ Line 24: / Line 24: @@
-''We decided that the term aggregation was not good, because it could be confused with other usages, like aggregations of cells in tissue culture or aggregate fruits. Tried the term phyllome arrangement, then at the end of the meeting, went with the term phyllome structure. After the meeting, Pankaj and Laurel proposed the term '''collective phyllome structure'''.''
+''We decided that the term aggregation was not good, because it could be confused with other usages, like aggregations of cells in tissue culture or aggregate fruits. Tried the term phyllome arrangement, then at the end of the meeting, went with the term phyllome structure. After the meeting, Pankaj and Laurel proposed the term '''collective phyllome structure''' to replace whorled phyllome structure.''
-''There was continued discussion about whorls versus rosettes, and whether or not we needed separate terms for each type of structure. In the end there was some consensus that we needed an umbrella term that could encompass both types of structures.''
+''There was continued discussion about whorls versus rosettes, and whether or not we needed separate terms for each type of structure. In the end there was a consensus that we needed an umbrella term that could encompass both types of structures.''
 ''There was some discussion of the scope of the ontology, and Barry pointed out that it should cover 'normal' organisms. Also, Dennis said that we should be working from the structures of basal groups toward more derived groups, rather than the other way around, to keep the evolutionary perspective.''

@@ Line 165: / Line 165: @@
 Ramona has sent out a draft proposal for review before the week's meeting
 Comments?
 ''Alejandra said she talked to the organizers, and we only need to submit 2 or 3 potential speakers. The others can come from submitted talks. Ramona and Laurel can be organizers for the symposium, and both of them could speak, to reduce the number of people who have to travel. Will need to ask for permission to use NSF funds for international travel. Ramona will send around a revised draft before next week's meeting.''

@@ Line 32: / Line 32: @@
 ''We worked on a definition for '''phyllome structure: Proposed def'n.:''' A collective plant structure on the plant axis that consists of two or more phyllomes in either one or more whorls or in a rosette. We will need to work on this definition, since it contains the undefined terms whorl and rosette.''
@@ Line 53: / Line 56: @@
 >>Tepal aggregation: A phyllome aggregation ''(or a perianth)'' composed of four or more tepals either in a rosette or in two or more whorled arrangements.
-[[File:phyllome whorl.jpg]]
 C. New term: '''Rosette:''' (see SF tracker item [https://sourceforge.net/tracker/func=detail&aid=2982618&group_id=76834&atid=835555/ rosette])
@@ Line 127: / Line 130: @@
 Pankaj would like to also include Aaron Liston (OSU), Richard Halsey (OSU) and Quentin Cronk (UBC; http://cronklab.wikidot.com/quentin-cronk).
@@ Line 159: / Line 165: @@
 Ramona has sent out a draft proposal for review before the week's meeting
 Comments?