POC Conf. Call 2-28-12 - Revision history

Cooperl: /* tracheary element and associated cells */

2012-03-05T22:05:14Z

tracheary element and associated cells

2012-03-05T21:56:19Z

tracheary element and associated cells

2012-03-05T21:55:56Z

tracheary element and associated cells

2012-03-05T21:42:05Z

axial system and ray system

2012-03-05T21:40:33Z

axial system and ray system

2012-03-05T20:54:30Z

Update from Phenotype RCN meeting, February 23rd-25th, 2012

2012-03-05T20:42:41Z

2012-03-01T19:13:17Z

2012-03-01T19:10:49Z

Open SourceForge Trackers:

2012-03-01T19:08:46Z

sclerenchyma cells

@@ Line 164: / Line 164: @@
 comment: May have any of the kinds of secondary wall thickenings found in tracheary elements. The area of contact between two tracheids has only bordered pits, whereas in vessel members (PO:0002003) it has openings in the cell wall called perforations, organized into perforation plates (term has been requested in GO).
@@ Line 176: / Line 178: @@
 part_of vessel (new term)
-''Rename xylem vessel member''
+''Rename 'xylem vessel member'''
@@ Line 183: / Line 185: @@
 proposed def.: A portion of xylem (PO:0005352) tissue that has as parts a tube-like series of vessel members (PO:0002003), the common walls of which have perforations.
-''Rename xylem vessel''
+''Rename 'xylem vessel'''

← Older revision		Revision as of 21:56, 5 March 2012
Line 141:		Line 141:
	''We could make a term for "wood cell". Any cell that is part of a portion of secondary xylem.''		''We could make a term for "wood cell". Any cell that is part of a portion of secondary xylem.''

−	Should we add a term like "substrate (water/sap/photosynthate/mineral) conducting/translocating cell"? To group vascular cells with hydroids and leptoids. Can't be with the vascular cells since they are in non-vascular plants. Problem is that this is a functional category, it should only be created using cross products, may be maintained as a separate layer. BS: Should keep structural anatomy separate from the functional anatomy. May be able to create them using XPs to GO.	+	''Should we add a term like "substrate (water/sap/photosynthate/mineral) conducting/translocating cell"? To group vascular cells with hydroids and leptoids. Can't be with the vascular cells since they are in non-vascular plants. Problem is that this is a functional category, it should only be created using cross products, may be maintained as a separate layer. BS: Should keep structural anatomy separate from the functional anatomy. May be able to create them using XPs to GO.''

← Older revision		Revision as of 21:55, 5 March 2012
Line 140:		Line 140:

	''We could make a term for "wood cell". Any cell that is part of a portion of secondary xylem.''		''We could make a term for "wood cell". Any cell that is part of a portion of secondary xylem.''
		+
		+	Should we add a term like "substrate (water/sap/photosynthate/mineral) conducting/translocating cell"? To group vascular cells with hydroids and leptoids. Can't be with the vascular cells since they are in non-vascular plants. Problem is that this is a functional category, it should only be created using cross products, may be maintained as a separate layer. BS: Should keep structural anatomy separate from the functional anatomy. May be able to create them using XPs to GO.

@@ Line 110: / Line 110: @@
 synonyms: vertical system, longitudinal system
-''This should be a portion of secondary vascular tissue.''
+''This should be a portion of secondary vascular tissue (existing term; PO:0025409)''
 ''Note: There is a typo (word missing) in the definition of portion of vascular tissue.''

← Older revision		Revision as of 21:40, 5 March 2012
Line 112:		Line 112:
	''This should be a portion of secondary vascular tissue.''		''This should be a portion of secondary vascular tissue.''

−	''Note: There is a typo (word missing) in the definition of ~~secondary~~ vascular tissue.''	+	''Note: There is a typo (word missing) in the definition of portion of vascular tissue.''

@@ Line 21: / Line 21: @@
 ''Including line drawings is also appropriate.''
-''Revisit MAG slide collect with a focus on which slides display the range of variation for PO terms, e.g., sieve cells in Arabidopsis, rice, maize, etc., versus trying to scan every slide.''
+''Revisit MAG slide collect with a focus on which slides display the range of variation for PO terms, e.g., sieve cells in Arabidopsis, rice, maize, etc., versus trying to scan every slide.  Focus on ones that have the annotations on them''
 ''There was a general interest in linking images to terms, from many people at the meeting.''

@@ Line 3: / Line 3: @@
 In attendance:
-POC members: Laurel Cooper (OSU), Justin Elser (OSU), Ramona Walls (NYBG), Pankaj Jaiswal (OSU), Barry Smith (University at Buffalo, NY)
+POC members: ''Laurel Cooper (OSU), Justin Elser (OSU), Ramona Walls (NYBG), Pankaj Jaiswal (OSU), Barry Smith (University at Buffalo, NY)''
-Absent: Dennis Stevenson (NYBG), Justin Preece (OSU), Marie Alejandra Gandolfo (Cornell University), Chris Mungall (Lawrence Berkeley National Lab)
+Absent: ''Dennis Stevenson (NYBG), Justin Preece (OSU), Marie Alejandra Gandolfo (Cornell University), Chris Mungall (Lawrence Berkeley National Lab)''
 Collaborators: none

@@ Line 207: / Line 207: @@
 =Open SourceForge Trackers:=
 ==[http://sourceforge.net/tracker/?func=detail&aid=3324056&group_id=76834&atid=835555 coleoptile emergence]==
-This was discussed at the NYBG Meeting, on [[Sunday_Sept_11th,_2011]]
+Moved to [[POC Conf. Call 3-6-12]]
 =Updates to the Trait Ontology=

@@ Line 203: / Line 203: @@
 ===[https://sourceforge.net/tracker/?func=detail&aid=3481660&group_id=76834&atid=835555 sclerenchyma cells]===
-''These edits are done in the obo file.''
+Sclerenchyma cells, including fibers, were moved to [[POC Conf. Call 3-6-12]].
 =Open SourceForge Trackers:=