POC Conf. Call 2-22-11 - Revision history

Rwalls: /* prophyll and scale leaf */

2011-02-25T15:04:20Z

prophyll and scale leaf

2011-02-25T15:03:53Z

vascular and non-vascular leaf

2011-02-24T16:23:38Z

prophyll and scale leaf

2011-02-24T15:59:22Z

pollen sac

2011-02-24T15:51:39Z

Plant cells and embyronic plant cell

2011-02-24T15:49:01Z

pollen sac

2011-02-24T15:46:39Z

Phenotype RCN Meeting this week

2011-02-22T22:56:54Z

Additional moss terms:

2011-02-22T22:56:46Z

Additional moss terms:

2011-02-22T22:56:32Z

Physcomitrella terms:These items were postponed until next week

← Older revision		Revision as of 15:04, 25 February 2011
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	''Should add new term for rhizome scale leaf: A scale leaf that grows from a rhizome.''		''Should add new term for rhizome scale leaf: A scale leaf that grows from a rhizome.''
		+
		+	''Will add scale-like leaf as a narrow synonym of vascular leaf.'' See: http://oregonstate.edu/trees/conifer_genera/false_cedars.html

	===[https://sourceforge.net/tracker/index.php?func=detail&aid=3028550&group_id=76834&atid=835555 vascular and non-vascular leaf]===		===[https://sourceforge.net/tracker/index.php?func=detail&aid=3028550&group_id=76834&atid=835555 vascular and non-vascular leaf]===

← Older revision		Revision as of 15:03, 25 February 2011
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	- ok as is - Suggest adding frond and needle as exact synonyms of vascular leaf.		- ok as is - Suggest adding frond and needle as exact synonyms of vascular leaf.

−
−	~~Suggest adding scale-like leaf as a narrow synonym of vascular leaf. See: http://oregonstate.edu/trees/conifer_genera/false_cedars.html~~

	''Ramona sent a response to Sharon Lewis, telling her that we are adding "leaf, vascular" as a synonym''		''Ramona sent a response to Sharon Lewis, telling her that we are adding "leaf, vascular" as a synonym''

← Older revision		Revision as of 16:23, 24 February 2011
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	''new proposed def'n:: A scale leaf that surrounds a dormant or perennating bud.''		''new proposed def'n:: A scale leaf that surrounds a dormant or perennating bud.''
		+
		+	''Primary name should be "bud scale leaf", with bud scale as exact synonym.''
		+
		+
		+	''Should add new term for rhizome scale leaf: A scale leaf that grows from a rhizome.''

	===[https://sourceforge.net/tracker/index.php?func=detail&aid=3028550&group_id=76834&atid=835555 vascular and non-vascular leaf]===		===[https://sourceforge.net/tracker/index.php?func=detail&aid=3028550&group_id=76834&atid=835555 vascular and non-vascular leaf]===

← Older revision		Revision as of 15:59, 24 February 2011
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−	''Alternative suggested definition seems okay. Will leave open on SF for a week for comment. Need to add term "anther lobe", part_of anther, has_part pollen sac. ~~Add~~ pollen sac has_part tapetum ''	+	''Alternative suggested definition seems okay. Will leave open on SF for a week for comment. Need to add term "anther lobe", part_of anther, has_part pollen sac. There was a suggestion to add pollen sac has_part tapetum, but this may not be appropriate for gymnosperms. ''

	===Plant cells and [https://sourceforge.net/tracker/?func=detail&aid=3177665&group_id=76834&atid=835555 embyronic plant cell]===		===Plant cells and [https://sourceforge.net/tracker/?func=detail&aid=3177665&group_id=76834&atid=835555 embyronic plant cell]===

← Older revision		Revision as of 15:51, 24 February 2011
Line 145:		Line 145:

	''It is was decided that we should probably make embryonic cell a child of both plant cell and embryonic plant structure, but we need to revisit this whole branch of the ontology''		''It is was decided that we should probably make embryonic cell a child of both plant cell and embryonic plant structure, but we need to revisit this whole branch of the ontology''
		+
		+	''For example, a coleoptile can be present in both embryo and in a seedling. Solution may be to have "embryonic coleoptile" and "seedling coleoptile" with develops from relation between them. Generic term coleoptile is a plant structure (phyllome?), embryonic coleoptile is an embryonic plant structure.''

	==Restructuring descendants of leaf (PO:0025034)==		==Restructuring descendants of leaf (PO:0025034)==

← Older revision		Revision as of 15:49, 24 February 2011
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−	''Need to add term "anther lobe", part_of anther, has_part pollen sac,''	+	''Alternative suggested definition seems okay. Will leave open on SF for a week for comment. Need to add term "anther lobe", part_of anther, has_part pollen sac. Add pollen sac has_part tapetum ''

	===Plant cells and [https://sourceforge.net/tracker/?func=detail&aid=3177665&group_id=76834&atid=835555 embyronic plant cell]===		===Plant cells and [https://sourceforge.net/tracker/?func=detail&aid=3177665&group_id=76834&atid=835555 embyronic plant cell]===

@@ Line 44: / Line 44: @@
 . Vision: where you’d like to go...
-''Integration of Trait Ontology into PO- phenotype section of PO, PO will provide values and attributes to describe the entities''
+''Integration of Trait Ontology into PO- phenotype section of PO, PO will provide values and attributes to describe the entities. POC will work on developing a set of precomposed phenotype terms (based on TO), plus improve post-composition scripts.  When pre-comps are mature and post-comp scripts are working, community can do their own post-composition. ''
 ''Phenote annotation tool will allow creation of post composed terms''

← Older revision		Revision as of 22:56, 22 February 2011
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	''These items were postponed until next week''		''These items were postponed until next week''
		+
	These were not requested by the Physcomitrella group, but are commonly used to describe mosses, so we may as well add them now.		These were not requested by the Physcomitrella group, but are commonly used to describe mosses, so we may as well add them now.

← Older revision		Revision as of 22:56, 22 February 2011
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	==Additional moss terms:==		==Additional moss terms:==
		+
		+	''These items were postponed until next week''
	These were not requested by the Physcomitrella group, but are commonly used to describe mosses, so we may as well add them now.		These were not requested by the Physcomitrella group, but are commonly used to describe mosses, so we may as well add them now.

@@ Line 317: / Line 317: @@
 non-vascular leaf, or obsolete them and create new children of leaf?
-=Physcomitrella terms:''These items were postponed until next week''=
+=Physcomitrella terms=
 See [[Terms requested by Physco group]] for a list of terms.