POC Conf. Call 11-22-11 - Revision history

Cooperl: /* Proposed new terms and definitions: */

2012-01-29T21:14:45Z

Proposed new terms and definitions:

2012-01-29T21:13:44Z

PDSO Revisions: Plant structure development stages

2011-12-12T13:30:54Z

2011-11-28T23:18:08Z

Plant Anatomical Spaces

2011-11-28T23:17:41Z

Plant Anatomical Spaces

2011-11-28T23:17:26Z

Plant Anatomical Spaces

2011-11-28T23:17:12Z

Plant Anatomical Spaces

2011-11-28T23:10:51Z

zygote stage

2011-11-28T23:08:46Z

plant embryo

2011-11-28T23:06:11Z

embryo stage

@@ Line 77: / Line 77: @@
 ''This tells users what order the stages go in, without having to number them. Although we can keep the numbers in existing stages, for new ones like this where there aren't that many, we can try not numbering them.''
-''"It would be nice if we could offer PDSO as a time line." -- We can do this to some extent (in the future) by using the precedes/preceded_by and succeeds/succeeded_by relations.''
+''"It would be nice if we could offer PSDS as a time line." -- We can do this to some extent (in the future) by using the precedes/preceded_by and succeeds/succeeded_by relations.''
 synonym: seed hair development stage (exact)

@@ Line 38: / Line 38: @@
 ''This can guide us for which parts of the PDSO to work on next, after we get through the upper level.  We looked at some of the stage terms for vegetative growth, such as leaf production stage (PO:0007133), which has a large number of child terms of the form: LP.01 one leaf visible to LP.20 twenty leaves visible.  Many of these stages have many of the maize gene models associated with them.''
-=PDSO Revisions: Plant structure development stages=
+=PSDS Revisions: Plant structure development stages=
 ==trichome/seed trichome development stages==
 At the 11-15-11 meeting, we decided to test one approach-  make each stage end when the next process begins, even if the process that marked the beginning of the first stage is still going on and to define the stages as the period of time when the GO processes occur.

← Older revision		Revision as of 13:30, 12 December 2011
Line 9:		Line 9:

	Collaborators: none		Collaborators: none
−
−	~~Streaming recording link:~~
−
−	~~https://ontology.webex.com/ontology/ldr.php?AT=pb&SP=MC&rID=59520772&rKey=43824185c45f9563~~
−	~~Download recording link:~~
−
−	~~https://ontology.webex.com/ontology/lsr.php?AT=dw&SP=MC&rID=59520772&rKey=f1eb135b8b18b6b1~~
−

@@ Line 284: / Line 284: @@
 ''We should check the usage of these annotations and make sure they are appropriate.  Are they directly on the space terms?''
-''If so, LC should talk with TB and see why they are there.  They can be corrected in the next data release. ''
+''If so, LC should talk with TB and see why they are there.  They can be corrected in the next data release, if necessary. ''
 =Collaborations=

@@ Line 279: / Line 279: @@
 ''The spaces are from CARO which is based on the FMA
 ''BS: comments about the FMA: (author Cornelius Roth): There may be actual genes that are associated with these holes or AE. May be assoc with a change during development. ''
+'

← Older revision		Revision as of 23:17, 28 November 2011
Line 279:		Line 279:

	''The spaces are from CARO which is based on the FMA		''The spaces are from CARO which is based on the FMA
−	BS: comments about the FMA: (author Cornelius Roth): There may be actual genes that are associated with these holes or AE. May be assoc with a change during development.	+	''BS: comments about the FMA: (author Cornelius Roth): There may be actual genes that are associated with these holes or AE. May be assoc with a change during development. ''
−		+	'
	''We should check the usage of these annotations and make sure they are appropriate. Are they directly on the space terms?''		''We should check the usage of these annotations and make sure they are appropriate. Are they directly on the space terms?''

← Older revision		Revision as of 23:10, 28 November 2011
Line 262:		Line 262:

	'''proposed def. zygote stage (PO:0001097):'''A sporophyte development stage that occurs during the interval between syngamy and the first cell division.		'''proposed def. zygote stage (PO:0001097):'''A sporophyte development stage that occurs during the interval between syngamy and the first cell division.
		+
		+
		+	''Should be 'plant zygote stage' (PO:0001097): A sporophyte development stage that occurs during the interval between syngamy and the first cell division and has as participant a plant zygote.''

	==[https://sourceforge.net/tracker/?func=detail&aid=3107505&group_id=76834&atid=835555 Plant Anatomical Spaces]==		==[https://sourceforge.net/tracker/?func=detail&aid=3107505&group_id=76834&atid=835555 Plant Anatomical Spaces]==

← Older revision		Revision as of 23:08, 28 November 2011
Line 254:		Line 254:

	-change from participates_in sporophyte development stage to participates_in embryo stage		-change from participates_in sporophyte development stage to participates_in embryo stage
		+
		+	''We decided to keep the long description in the def'n of the plant embryo and make it a participant in the plant embryo stage. Can keep the long description in the comment of the stage again.''

	===[https://sourceforge.net/tracker/?func=detail&aid=3439450&group_id=76834&atid=835555 zygote stage]===		===[https://sourceforge.net/tracker/?func=detail&aid=3439450&group_id=76834&atid=835555 zygote stage]===

@@ Line 240: / Line 240: @@
 ''BS: suggest if you could divide the comments into the specific taxa- users could read what they need- alternate comments''
-''Suggested new def'n: A sporophyte vegetative stage that has as its primary participant a plant embryo.''
+''Suggested new def'n: plant embryo stage (PO:0007631): A sporophyte vegetative stage that has as its primary participant a plant embryo.''
-BS: Always use has_participant whenever possible
+''BS: Always use has_participant whenever possible''
 ====plant embryo====