POC Conf. Call 11-1-11 - Revision history

Rwalls: /* Infectious disease ontology for plants */

2011-12-06T16:26:11Z

Infectious disease ontology for plants

2011-11-08T21:43:44Z

Infectious disease ontology for plants

2011-11-08T21:42:48Z

2011-11-08T21:38:23Z

2011-11-08T21:35:31Z

2011-11-07T20:10:43Z

sub-types of whole plant development stage: vegetative, reproductive, senescent, and dormant stages

2011-11-07T17:40:14Z

proposed terms and definitions

2011-11-03T20:58:15Z

Upcoming meetings and Presentations 2011/2012:

2011-11-03T20:49:09Z

proposed terms and definitions

2011-11-03T20:48:20Z

proposed terms and definitions

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 ''Crown galls - caused by virus - may be infectious''
-''What about chronic disease like Lime (do you mean Lyme disease?)? Are plants ever killed by galls? Plants can get so many of them that they die, but one gall does not spread to another. May be other diseases that can start out small and either remain small or spread to become chronic.''
+''What about chronic disease like Lyme disease? Are plants ever killed by galls? Plants can get so many of them that they die, but one gall does not spread to another. May be other diseases that can start out small and either remain small or spread to become chronic.''
 ''Do plants have immune systems? They have systematic responses to pathogens and pests. That work needs to be done in IDO.''

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 =Infectious disease ontology for plants=
-''At last weeks meeting, BS asked if anyone wanted to co-author a preliminary paper on infectious diseases in plants, as an extension of the [http://infectiousdiseaseontology.org/page/Main_Page IDO]. RW said she would like to do this, if BS thought that her limited knowledge of plant diseases was not a problem. He said it shouldn't be at this stage. Need to go through IDO and pick out those terms/regions in the ontology that are relevant to plants, and how plant diseases would fit into IDO's framework. How might we test the results in specific disease in plants. e.g., host, pathogen, vector  - already have those.''
+At last weeks meeting, BS asked if anyone wanted to co-author a preliminary paper on infectious diseases in plants, as an extension of the [http://infectiousdiseaseontology.org/page/Main_Page IDO]. RW said she would like to do this, if BS thought that her limited knowledge of plant diseases was not a problem. He said it shouldn't be at this stage.
 ''We discussed whether or not there are non-infectious diseases in plants. Closest thing is a gall, which is a plant response to a insect or other foreign organism. This leads to a cancer like growth that is not contagious. IDO has that covered. There are also endophytes in plants -- fungi that live within the plant but are not pathogenic. Maybe be comparable to the bacteria and other organisms that live in and on humans with little known effect.''

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 Collaborators: none
-Any changes or corrections (additions/deletions, etc) needed in the minutes from the [[POC_Conf._Call_10-18-11]]? ''There were no additions, deletions, or changes except for minor typos''
+Any changes or corrections (additions/deletions, etc) needed in the minutes from the [[POC_Conf._Call_10-18-11]]? ''There were no additions, deletions, or changes except for minor typos.''
 Back to [[POC Meetings Minutes]]

@@ Line 9: / Line 9: @@
 Collaborators: none
-Any changes or corrections (additions/deletions, etc) needed in the minutes from the [[POC_Conf._Call_10-18-11]]?
+Any changes or corrections (additions/deletions, etc) needed in the minutes from the [[POC_Conf._Call_10-18-11]]? ''There were no additions, deletions, or changes except for minor typos''
 Back to [[POC Meetings Minutes]]

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 Absent: Chris Mungall (Lawrence Berkeley National Lab), Laurel Cooper (OSU), Marie Alejandra Gandolfo (Cornell University), Pankaj Jaiswal (OSU), Justin Elser (OSU), Justin Preece (OSU)
 Collaborators: none
 Any changes or corrections (additions/deletions, etc) needed in the minutes from the [[POC_Conf._Call_10-18-11]]?
 Back to [[POC Meetings Minutes]]

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 =PSDSO revisions=
-==sub-types of whole plant development stage: vegetative, reproductive, senescent, and dormant stages==
+==sub-types of whole plant development stage: senescent stage==
 Existing terms for vegetative, reproductive, senescent and dormant stages are actually referring only to the sporophyte stage, so they will be made subtypes of sporophyte development stage, and renamed sporophyte vegetative development stage, etc.  Corresponding stages will be created as subtypes of gametophyte stage.

← Older revision		Revision as of 17:40, 7 November 2011
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	====proposed terms and definitions====		====proposed terms and definitions====
		+	See SF link: [http://sourceforge.net/tracker/?func=detail&aid=3432979&group_id=76834&atid=835555 gametophyte/sporophyte senescent stage]

	'''proposed definition, gametophyte senescent stage:''' A gametophyte development development stage that ''has as a participant a gametophyte/occurs'' during the interval between an event of cell death and the death of the gametophyte, such that the initial cell death is connected to the death of the organism by processes of dismantling of cell components and membranes, loss of functional chloroplasts, and an overall decline in metabolism.		'''proposed definition, gametophyte senescent stage:''' A gametophyte development development stage that ''has as a participant a gametophyte/occurs'' during the interval between an event of cell death and the death of the gametophyte, such that the initial cell death is connected to the death of the organism by processes of dismantling of cell components and membranes, loss of functional chloroplasts, and an overall decline in metabolism.

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 =Upcoming meetings and Presentations 2011/2012:=
-''No news on meeting at this week's meeting''
+''No news on meetings at this week's meeting''
 ==[http://meetings.cshl.edu/meetings/plants11.shtml Plant Genomes & Biotechnology: From Genes to Networks], CSHL==

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 ''See also this site: [http://www.sidthomas.net/SenWiki/tiki-index.php Senwiki]
-''Also located a 2007 Annals of Botany review: Senescence processes in plants. Annual Plant Reviews, Volume 26.
+''Also located a 2007 Annals of Botany review: "Senescence processes in plants". Annual Plant Reviews, Volume 26.
-S. Gan. ed. 2007. Oxford: Blackwell Publishing Ltd.  Not in the OSU library, but requested by interlibrary loan''
+S. Gan. ed. 2007. Oxford: Blackwell Publishing Ltd.''
 =Upcoming meetings and Presentations 2011/2012:=