POC Conf. Call 10-20-10 - Revision history

Cooperl: /* Upcoming meetings 2010-2011: */

2010-10-25T17:43:44Z

Upcoming meetings 2010-2011:

Cooperl: /* Plans for a publication to detail the updates in the PO */

2010-10-23T00:18:13Z

Plans for a publication to detail the updates in the PO

Cooperl: /* Plans for a publication to detail the updates in the PO */

2010-10-23T00:17:49Z

Plans for a publication to detail the updates in the PO

Rwalls: /* stylar ridge */

2010-10-22T20:28:41Z

stylar ridge

Rwalls: /* Adding links to more images through PlantSystematics.org */

2010-10-22T16:30:57Z

Adding links to more images through PlantSystematics.org

Rwalls: /* stylar ridge */

2010-10-22T13:52:36Z

stylar ridge

Rwalls: /* stylar ridge */

2010-10-22T13:51:33Z

stylar ridge

Rwalls: /* Raphe, funicle and hilum */

2010-10-22T12:44:15Z

Raphe, funicle and hilum

Rwalls: /* Priorities for next release */

2010-10-22T12:35:13Z

Priorities for next release

Rwalls: /* Priorities for next release */

2010-10-22T12:35:00Z

Priorities for next release

@@ Line 332: / Line 332: @@
 Registration is open, '''abstract deadline Nov 1, 2010'''. To qualify for reduced registration rates, must '''register by October 15th'''.
-Lol and Ramona are planning on attending and setting up a [[PAG_2011_Collaborators_Workshop]] half day workshop and meeting with collaborators. We will present a  computer demonstration,and poster and possibly a Phenote workshop.
+Lol and Ramona are planning on attending and setting up a [[PAG_2011_Collaborators_Workshop]] half day workshop and meeting with collaborators.
 Alejandra cannot attend. PJ is not attending as he is teaching.  DWS will attend also Justin Preece.
 ''

@@ Line 253: / Line 253: @@
 ==Plans for a publication to detail the updates in the PO==
--This is a priority for the fall to detail the changes in the PSO and promote its application
+-This is a priority for the fall to detail the changes in the PSO and promote its application see [[TIPS Fall 2010]]
 -We have been keeping track of the changes on the 'Summary of Changes' page

← Older revision		Revision as of 00:17, 23 October 2010
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	-Compare to previous publication [http://www.plantphysiol.org/cgi/content/abstract/143/2/587 Ilic et al, Plant Phys].		-Compare to previous publication [http://www.plantphysiol.org/cgi/content/abstract/143/2/587 Ilic et al, Plant Phys].
−

	==Laurel and Ramona- Adding Annotations==		==Laurel and Ramona- Adding Annotations==

← Older revision		Revision as of 20:28, 22 October 2010
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−	''Ramona will research further to see if she find a better description of these structures. PJ sent paper by LaRoux and Kellogg that describes floret development in Poaceae. It clearly describes the gynoecial ridge, and refers to the early publication by Cheng and Pareddy (which was a book chapter). PJ suggested we could contact Kellogg with link to SF tracker item for her input on these definitions if we can't find literature on them.''	+	''Ramona will research further to see if she find a better description of these structures. PJ sent paper by [http://www.amjbot.org/cgi/content/full/86/3/354 LaRoux and Kellogg, 1999], that describes floret development in Poaceae. It clearly describes the gynoecial ridge, and refers to the early publication by Cheng and Pareddy (which was a book chapter). PJ suggested we could contact Kellogg with link to SF tracker item for her input on these definitions if we can't find literature on them.''

	==AmiGO Browser Issues and Questions==		==AmiGO Browser Issues and Questions==

@@ Line 39: / Line 39: @@
 ''PS.org is set up so that users submit their search criteria, then this generates an SQL query, rather than having the queries generated directly. This prevents people from messing with the database. We can use Boolean operators for our queries, even though they aren't currently used on PS.org''
-''Ramona and Ale are working on templates pages to show what the search interface and search results pages should look like. Will distribute to group when they are ready.''
+''Ramona and Ale are working on templates pages to show what the search interface and search results pages should look like. Will post them on the collaborators page when they are ready.''
 ==PO slims==

← Older revision		Revision as of 13:52, 22 October 2010
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−	''Ramona will research further to see if she find a better description of these structures. PJ sent paper by Kellogg ~~et al.~~ that describes floret development in Poaceae. It clearly describes the gynoecial ridge, and refers to the early publication by Cheng and Pareddy (which was a book chapter). PJ suggested we could contact Kellogg with link to SF tracker item for her input on these definitions.''	+	''Ramona will research further to see if she find a better description of these structures. PJ sent paper by LaRoux and Kellogg that describes floret development in Poaceae. It clearly describes the gynoecial ridge, and refers to the early publication by Cheng and Pareddy (which was a book chapter). PJ suggested we could contact Kellogg with link to SF tracker item for her input on these definitions if we can't find literature on them.''

	==AmiGO Browser Issues and Questions==		==AmiGO Browser Issues and Questions==

← Older revision		Revision as of 13:51, 22 October 2010
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−	''Ramona will research further to see if she find a better description of these structures. PJ sent paper by Kellogg et al. that describes floret development in Poaceae. It describes a gynoecial ridge, ~~which seems~~ to be the ~~same thing as~~ a ~~stylar ridge~~. ~~RW can~~ contact Kellogg with link to SF tracker item for her input on these definitions.''	+	''Ramona will research further to see if she find a better description of these structures. PJ sent paper by Kellogg et al. that describes floret development in Poaceae. It clearly describes the gynoecial ridge, and refers to the early publication by Cheng and Pareddy (which was a book chapter). PJ suggested we could contact Kellogg with link to SF tracker item for her input on these definitions.''

	==AmiGO Browser Issues and Questions==		==AmiGO Browser Issues and Questions==

← Older revision		Revision as of 12:44, 22 October 2010
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	''These definitions were accepted and will be added to the developer's file.''		''These definitions were accepted and will be added to the developer's file.''
		+
		+
		+
		+	===[https://sourceforge.net/tracker/index.php?func=detail&aid=2959654&group_id=76834&atid=835555 stylar ridge]===
		+
		+	The following terms have no is_a parents and no definitions:
		+
		+	stylar ridge of lower floret of pedicellate spikelet of ear (PO:0009024)
		+
		+	stylar ridge of lower floret of sessile spikelet of ear (PO:0009076)
		+
		+	stylar ridge of upper floret of pedicellate spikelet of ear (PO:0009079)
		+
		+	stylar ridge of upper floret of sessile spikelet of ear (PO:0009092)
		+
		+	They already have part_of relationships to their corresponding spikelets
		+
		+
		+	Each of them occurs in a different structure, and has slightly different development, but they are all characterized by the following description:
		+	“The gynoecium development of the lower floret begins with the production of a ridge on the abaxial surface of the apical meristem of the floret, distal to the third stamen (which later degenerates). This is the stylar ridge.” (MaizeGDB:60893)
		+
		+	Suggest a '''new parent term stylar ridge,''' proposed definition: A portion of meristem tissue that is part of a floret meristem and is characterized as a ridge on the abaxial surface of a floret meristem.
		+
		+	[FYI: Floret meristem (sensu Poaceae) (PO:0006329): Meristem that gives rise to the organs of a floret of a grass plant. [source: GR:pj]. Is_a floral meristem, which is_a meristem. Perhaps floral meristem should be is_a apical meristem instead.]
		+
		+
		+	'''Proposed definitions for children''':
		+
		+	stylar ridge of lower floret of pedicellate spikelet of ear: A stylar ridge that is part of a gynoecium of a lower floret of pedicellate spikelet of ear.
		+	Comment: While the development of this stylar ridge is very similar to that of the upper florets, the development does not proceed beyond the early ridge stage.
		+
		+	stylar ridge of lower floret of sessile spikelet of ear: A stylar ridge that is part of a gynoecium of a lower floret of sessile spikelet of ear.
		+	Comment: Continued overgrowth of the shoot apex (which becomes the ovule primordium) by the ring of stylar tissue leads to the formation of the stylar canal, which is detected as a slight protruberance on the mature ovary.
		+
		+	stylar ridge of upper floret of pedicellate spikelet of ear: A stylar ridge that is part of a gynoecium of a pedicellate spikelet of ear.
		+
		+	stylar ridge of upper floret of sessile spikelet of ear: A stylar ridge that is part of a gynoecium of a sessile spikelet of ear.
		+
		+	Definitions from MaizsGDB cite Cheng & Pareddy, ID#60893 but I can’t find this reference. Not sure where the descriptions came from. Can’t actually find any references to stylar ridge on WOS. There are no annotations to these terms in the PO.
		+
		+
		+	''Ramona will research further to see if she find a better description of these structures. PJ sent paper by Kellogg et al. that describes floret development in Poaceae. It describes a gynoecial ridge, which seems to be the same thing as a stylar ridge. RW can contact Kellogg with link to SF tracker item for her input on these definitions.''

	==AmiGO Browser Issues and Questions==		==AmiGO Browser Issues and Questions==

← Older revision		Revision as of 12:35, 22 October 2010
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	Ramona has been working on suggestions for is_a parents, as well as new classes where needed.		Ramona has been working on suggestions for is_a parents, as well as new classes where needed.
		+

	''The following items were addressed this week:''		''The following items were addressed this week:''

@@ Line 104: / Line 104: @@
 Ramona has been working on suggestions for is_a parents, as well as new classes where needed.
 ===Raphe, funicle and hilum===
@@ Line 132: / Line 134: @@
 '''Question''': For all of these, are they better classified as portions of plant tissue (contain only one tissue type) or cardinal organ parts (contain more than one tissue type? Depending on the answer to this question, all of the following definitions will be portions of plant tissue or cardinal organ parts.
@@ Line 147: / Line 151: @@
 '''hilum groove:''' A cardinal organ part that forms a longitudinal groove in the testa through the prominent hilum of a seed. is_a cardinal organ part, part_of seed.
 ==AmiGO Browser Issues and Questions==