POC Conf. Call 10-2-12 - Revision history

Cooperl: /* Ramona's last day :-( */

2012-10-08T22:11:36Z

Ramona's last day :-(

Rwalls: /* Name changes */

2012-10-04T20:55:26Z

Name changes

Rwalls: /* whole plant fruit ripening stage */

2012-10-04T20:49:09Z

whole plant fruit ripening stage

Rwalls: /* whole plant fruit formation stage */

2012-10-04T20:37:13Z

whole plant fruit formation stage

Rwalls: /* Update from Cornell */

2012-10-04T20:15:41Z

Update from Cornell

Rwalls: /* Manuscripts in prep */

2012-10-04T20:15:32Z

Manuscripts in prep

Rwalls: /* Ramona's last day :-( */

2012-10-04T20:15:19Z

Ramona's last day :-(

Rwalls at 20:08, 4 October 2012

2012-10-04T20:08:33Z

Cooperl: /* PRO-PO-GO meeting, May 2013 */

2012-10-03T17:41:04Z

PRO-PO-GO meeting, May 2013

Cooperl: /* PRO-PO-GO meeting, ~May 2013 */

2012-10-03T17:40:28Z

PRO-PO-GO meeting, ~May 2013

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 =Ramona's last day :-(=
 As most of you know, Ramona is leaving the NYBG to work for iPlant. Her last day at the Garden will be Wednesday, October 17th. She will be available afterwards to complete work on the manuscripts in progress (paper on plant anatomical entities and paper on development stages for Physiologia Plantarum).
 =Update from Cornell=

@@ Line 103: / Line 103: @@
 '''4 flowering stage (PO:0007016)''' change name to '''whole plant flowering stage'''.
@@ Line 117: / Line 119: @@
 This definition needs work (e.g., not all flowers open), so this change is just for triage. We can come back to it later.
 We have already done extensive work on the definition of [https://sourceforge.net/tracker/index.php?func=detail&aid=3324099&group_id=76834&atid=835555 3 inflorescence detectable stage].

@@ Line 78: / Line 78: @@
 '''New proposed name:''' whole plant fruit ripening stage.
-'''New proposed def.:''' A sporophyte reproductive stage (PO:0007130) that begins when a fruit (PO:0009001) on a whole plant (PO:0000003) is begins the process of ripening (GO:0009835) and ends when (1) the whole plant begins a sporophyte senescent stage (PO:0007017), (2) the whole plant begins a sporophyte dormant stage (PO:0007132), or (3) all fruits on the whole plant are finished ripening, whichever comes first.
+'''New proposed def.:''' A sporophyte reproductive stage (PO:0007130) that begins when a fruit (PO:0009001) on a whole plant (PO:0000003) begins the process of ripening (GO:0009835) and ends when (1) the whole plant begins a sporophyte senescent stage (PO:0007017), (2) the whole plant begins a sporophyte dormant stage (PO:0007132), or (3) all fruits on the whole plant are finished ripening, whichever comes first.
 comment: This term is to be used for a stage of development of a whole plant. For the stages of development of an individual fruit, see fruit development stage (PO:0001002). Although individual fruits are undergoing ripening (which is a type of senescence) during this stage, the whole plant is not yet undergoing multicelluar organism senescence (GO:0010259). An annual species generally will have only one fruit ripening stage in its life, followed by a sporophyte senescent stage (PO:0007017), as in case (1). A perennial species may have one fruit ripening stage for each growing season, followed by a sporophyte dormant stage (PO:0007132), as in case (2). In evergreen species, the plant may remain in the sporophyte reproductive stage (PO:0007130) after all fruit has ripened, without entering dormancy or senescence, as in case (3). In plants with continuous (i.e., indeterminate) fruit development (GO:0010154), new fruits may continue to develop after the first fruit has begun to ripen and the whole plant fruit development stage (PO:id) has ended. Although the use of stages like dough or particular ripening stages (see synonyms) properly refer to the development of an individual fruit, they are used as here to extrapolate to a whole plant.
@@ Line 87: / Line 89: @@
 This definition may change slightly as we work on the new and revised terms for fruit development stages.
 ==Name changes==

@@ Line 40: / Line 40: @@
 Comment: This term is to be used for a stage of development of a whole plant (PO:0000003). For the stages of development of an individual fruit, see fruit development stage (PO:0001002). An annual plant will only have one fruit formation stage in its life, while a perennial may have one fruit formation stage for each growing season. In plants with continuous (i.e., indeterminate) fruit development (GO:0010154), new fruits may continue to develop after the first fruit has begun to ripen and the fruit ripening stage of whole plant (PO:0007042) has begun. Although the use of stages like milk or particular fruit sizes (see synonyms) properly refer to the development of an individual fruit, they are used as here to extrapolate to a whole plant.
 has_part fruit development stage (PO:0001002) ''This could be made more specific, after we add specific types of fruit development stages.''
@@ Line 46: / Line 48: @@
 This definition will probably change slightly as we work on the new and revised terms for fruit development stages (for example, we may change definition to refer to new stages called fruit initiation stage and fruit ripening stage), but can we accept the new name and provisional definition?
 ==[http://sourceforge.net/tracker/?func=detail&aid=3565059&group_id=76834&atid=835555 whole plant fruit ripening stage]==

@@ Line 23: / Line 23: @@
 =Update from Cornell=
 Ale has been in communication with Bob Turgeon and got comments from him on phloem terms. He had some questions and Ale will have more details next week, as well as some updated definitions.
 =Fruit development stages for whole plants=

← Older revision		Revision as of 20:15, 4 October 2012
Line 21:		Line 21:
	As most of you know, Ramona is leaving the NYBG to work for iPlant. Her last day at the Garden will be Wednesday, October 17th. She will be available afterwards to complete work on the manuscripts in progress (paper on plant anatomical entities and paper on development stages for Physiologia Plantarum).		As most of you know, Ramona is leaving the NYBG to work for iPlant. Her last day at the Garden will be Wednesday, October 17th. She will be available afterwards to complete work on the manuscripts in progress (paper on plant anatomical entities and paper on development stages for Physiologia Plantarum).

		+	=Manuscripts in prep=
		+	LC will send around PAE paper draft in the next few days. Would like to have it submitted next week.
		+
		+	RW will have draft of PSDS paper ready in a few days, but we checked deadline and we can wait until mid-November to submit. RW should wait until after the PAE paper has been circulated before sending around the PSDS paper. We will still need to have the PSDS paper close to finished by the end of October, because RW won't have much time to work on it after October.

	=Update from Cornell=		=Update from Cornell=

@@ Line 3: / Line 3: @@
 In attendance:
-POC members:
+POC members: Laurel Cooper (OSU), Marie Alejandra Gandolfo (Cornell), Barry Smith (University at Buffalo, NY), Justin Elser (OSU), Justin Preece (OSU), Pankaj Jaiswal (OSU), Ramona Walls (NYBG)
 Collaborators: none
@@ Line 15: / Line 14: @@
-Any changes or corrections (additions/deletions, etc) needed in the minutes from the [[POC_Conf._Call_9-25-12]]?
+Any changes or corrections (additions/deletions, etc) needed in the minutes from the [[POC_Conf._Call_9-25-12]]? ''Not additions, deletions, or changes.''
 Back to [[POC Meetings Minutes]]
 =Ramona's last day :-(=
-As most of you know, Ramona is leaving the NYBG to work for iPlant. Her last day at the Garden will be Wednesday, October 17th. She will be available afterwards to complete work on the manuscripts in progress (paper on plant anatomical entities for Plant Phys and paper on development stages for Physiologia Plantarum).
+As most of you know, Ramona is leaving the NYBG to work for iPlant. Her last day at the Garden will be Wednesday, October 17th. She will be available afterwards to complete work on the manuscripts in progress (paper on plant anatomical entities and paper on development stages for Physiologia Plantarum).

@@ Line 132: / Line 132: @@
 ==PRO-PO-GO meeting, May 2013==
 Location: Buffalo, NY
-Tentative Dates: May 8-9th or May 15-16, 2013.
+Tentative Dates: May 8-9th or May 15-16th, 2013.
 Goals:

@@ Line 130: / Line 130: @@
 possible venue for CROP white paper?
-==PRO-PO-GO meeting, ~May 2013==
+==PRO-PO-GO meeting, May 2013==
 Location: Buffalo, NY