POC Conf. Call 10-18-11 - Revision history

Cooperl at 19:41, 8 March 2012

2012-03-08T19:41:33Z

Cooperl: /* Next Reg Tues meeting scheduled for Tuesday, Nov. 1, 2011 at 10am PDT/1pm EDT */

2011-11-08T21:37:08Z

Next Reg Tues meeting scheduled for Tuesday, Nov. 1, 2011 at 10am PDT/1pm EDT

Cooperl: /* Next Reg Tues meeting scheduled for Tuesday, Nov. 1, 2011 at 10am PDT/1pm EDT */

2011-11-08T21:36:49Z

Next Reg Tues meeting scheduled for Tuesday, Nov. 1, 2011 at 10am PDT/1pm EDT

Cooperl: /* Goals and Priorities: */

2011-10-27T12:54:12Z

Goals and Priorities:

Cooperl: /* Goals and Priorities: */

2011-10-27T12:49:51Z

Goals and Priorities:

Cooperl at 12:48, 27 October 2011

2011-10-27T12:48:45Z

Rwalls: /* Annotation wiki */

2011-10-20T13:06:21Z

Annotation wiki

Rwalls: /* ICBO 2012 */

2011-10-20T12:57:27Z

ICBO 2012

Rwalls: /* PAG 2012 */

2011-10-20T12:55:02Z

PAG 2012

Rwalls: /* Botany 2012 */

2011-10-20T12:47:56Z

Botany 2012

← Older revision		Revision as of 19:41, 8 March 2012
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	Any changes or corrections (additions/deletions, etc) needed in the minutes from the [[POC_Conf._Call_10-11-11]]? ''None''		Any changes or corrections (additions/deletions, etc) needed in the minutes from the [[POC_Conf._Call_10-11-11]]? ''None''

−	~~[https://ontology.webex.com/ontology/ldr.php?AT=pb&SP=MC&rID=58402002&rKey=fcef92f14d9a85a8 Streaming recording link]~~
−
−	~~[https://ontology.webex.com/ontology/lsr.php?AT=dw&SP=MC&rID=58402002&rKey=c41a5a6a508b3194 Download recording link]~~

	Back to [[POC Meetings Minutes]]		Back to [[POC Meetings Minutes]]

← Older revision		Revision as of 21:37, 8 November 2011
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	=Next Reg Tues meeting scheduled for Tuesday, Nov. 1, 2011 at 10am PDT/1pm EDT=		=Next Reg Tues meeting scheduled for Tuesday, Nov. 1, 2011 at 10am PDT/1pm EDT=

−	No meeting on 10/15/2011.	+	No meeting on 10/25/2011.

← Older revision		Revision as of 21:36, 8 November 2011
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	=Next Reg Tues meeting scheduled for Tuesday, Nov. 1, 2011 at 10am PDT/1pm EDT=		=Next Reg Tues meeting scheduled for Tuesday, Nov. 1, 2011 at 10am PDT/1pm EDT=

−	No meeting on 11/25/2011.	+	No meeting on 10/15/2011.

@@ Line 49: / Line 49: @@
 *Links to images on PlantSystematics.org - '''Skype meeting with KN scheduled for 2:00/11:00 on Friday, October 21''' ''PJ will confirm that he can make it on Friday. JE and JP can attend.''
-'''Collaborative projects:'''
+-What are the plans after this?
--Mapping of Flora of North America Glossary to PO terms -- What are the plans after this? ''Once mappings are done, want to see how PO shows up in their data base. Show utility of PO for recovering descriptors from free text. FNA is using natural language processing to map their descriptions to PO. We are starting with plant structures, and later will add phenotype descriptors. We will start with leaf characters. Will use PATO as it has terms available, and add PO terms as needed. Will also help show utility of PO to systematists.''
+''Once mappings are done, want to see how PO shows up in their data base. Show utility of PO for recovering descriptors from free text.''
 -Others (These may be longer term than the next release):
--leaf character ontology for Phenotype RCN? ''see notes above''
+* Leaf character ontology for Phenotype RCN? ''see notes above''
--linking ontology terms to character matrices using Morphobank?
+* Linking ontology terms to character matrices using Morphobank?
--''Also need to work on providing PO in glossary form, to eventually replace APWeb Glossary. PJ has hired new grad student who will be working on this. This will be useful for users of APWeb Glossary who need a glossary, but don't want to use AmiGO browser. We could eventually incorporate other terms from APweb into PO if needed.''
+''Also need to work on providing PO in glossary form, to eventually replace APWeb Glossary. PJ has hired new grad student who will be working on this. This will be useful for users of APWeb Glossary who need a glossary, but don't want to use AmiGO browser. We could eventually incorporate other terms from APweb into PO if needed.''
 ===Timeline===

@@ Line 43: / Line 43: @@
 *New association files: Physcomitrella, grape, potato (?)
-*fix dbxrefs for Fragaria annotations
+*Fix dbxrefs for Fragaria annotations
 *ABRC annotations to PO and TO terms ''These are descriptions of mutant phenotypes from Arabidopsis stock center, based on free text descriptions''

@@ Line 6: / Line 6: @@
 Absent: Chris Mungall (Lawrence Berkeley National Lab), Laurel Cooper (OSU), Marie Alejandra Gandolfo (Cornell University)
 Collaborators: none
 Any changes or corrections (additions/deletions, etc) needed in the minutes from the [[POC_Conf._Call_10-11-11]]? ''None''
 [https://ontology.webex.com/ontology/ldr.php?AT=pb&SP=MC&rID=58402002&rKey=fcef92f14d9a85a8 Streaming recording link]
-−
 [https://ontology.webex.com/ontology/lsr.php?AT=dw&SP=MC&rID=58402002&rKey=c41a5a6a508b3194 Download recording link]

@@ Line 322: / Line 322: @@
 JP can also present a talk (maybe genomics section)
-Sematic web conference focused on life science. December. Folks such as TW from NCBO will be there.
+==Sematic web conference focused on life science==
 ==[http://purl.bioontology.org/ICBO/ ICBO 2012]==

@@ Line 335: / Line 335: @@
 We also have the opportunity to organize an anatomy workshop as well along with CM and MH- need to decide about this soon
 ===Relevant dates ===
@@ Line 356: / Line 359: @@
 Possible topics: finding commonality in development stages across the plant kingdom (revisions of PGDSO), plant phenotypes in ontologies, community driven annotation efforts (new application from JP and others), others?
 =Next Reg Tues meeting scheduled for Tuesday, Nov. 1, 2011 at 10am PDT/1pm EDT=
 No meeting on 11/25/2011.

@@ Line 196: / Line 196: @@
 ''PJ may be tied up on Sat am, so we will not plan on him giving a talk.  LC will also do a computer demo.''
@@ Line 202: / Line 201: @@
 '''We need to discuss what the PO approach and strategy to phenotypes is.  Abstract deadline is November 11'''
 The PO will take part in an Outreach booth organized by MaizeGDB and host a computer demo.

← Older revision		Revision as of 12:47, 20 October 2011
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	''PJ will check with Gramene and Doreen Ware to see if they want to co-host a booth.''		''PJ will check with Gramene and Doreen Ware to see if they want to co-host a booth.''
		+
		+	===Annotation wiki===
		+	JP can also present a talk (maybe genomics section)
		+
		+	Sematic web conference focused on life science. December. Folks such as TW from NCBO will be there.

	==[http://purl.bioontology.org/ICBO/ ICBO 2012]==		==[http://purl.bioontology.org/ICBO/ ICBO 2012]==